Array 1 253964-252836 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOS01000023.1 Salmonella enterica subsp. enterica serovar Newport strain SN2667_1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253963 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 253902 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 253841 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 253780 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 253719 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 253658 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 253597 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 253536 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 253475 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 253414 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 253353 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 253292 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 253231 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 253170 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 253109 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 253048 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 252987 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 252926 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 252865 29 100.0 0 ............................. | A [252838] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271758-270633 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOS01000023.1 Salmonella enterica subsp. enterica serovar Newport strain SN2667_1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271757 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 271696 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 271635 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 271574 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 271513 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 271452 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 271391 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 271330 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 271269 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 271208 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 271147 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 271086 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 271025 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 270964 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 270903 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 270842 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 270781 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 270720 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 270660 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //