Array 1 1653529-1644946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020363.1 Sulfolobus acidocaldarius strain Y14 13-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1653528 24 100.0 37 ........................ AACTGACAAAATTTAATTACGTCAAAAGCGAAGTGAA 1653467 24 100.0 36 ........................ AACATGGAAAAGGTTGGTAACAAATTGAAGCTCCAG 1653407 24 100.0 36 ........................ TATATATTTTCATAGCTTATGTTAATATATGGAACA 1653347 24 100.0 35 ........................ AGGTAAGTTACGGGGTTTATTTATGGACTTTACTC 1653288 24 100.0 35 ........................ ATTATACTACCGAGGGATTGGGCGGTGTCGGGGAA 1653229 24 100.0 34 ........................ TAAGGACGTATTTTACGACGAAAAAGGACTTTAT 1653171 24 100.0 34 ........................ CATATAGAACCGCCAGTAAGGCCAATCGAAAACC 1653113 24 100.0 35 ........................ TTTCCGGTAGCCGAACCCGTAGTCACGGTTACACT 1653054 24 100.0 38 ........................ TAAAAACCCCATAGGGTTTCGCTTTGAGCCGAAAGCGA 1652992 24 100.0 36 ........................ GGACAAACGAAGCTGAGGAACTCGAGGACTGGCATC 1652932 24 100.0 36 ........................ GTTGAGACTAAGCCCCTTTTTCACCACCTCTGGAAA 1652872 24 100.0 37 ........................ AAGGAATACTTAACAATACTTTACGACTTCATGACTA 1652811 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 1652749 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 1652693 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCCTTAAAAAATAAGGAAA 1652630 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 1652572 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 1652511 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 1652445 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 1652385 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 1652322 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 1652263 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 1652203 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 1652144 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 1652085 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 1652025 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 1651964 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 1651903 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 1651844 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 1651786 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 1651724 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 1651665 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 1651607 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 1651548 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 1651488 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 1651429 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 1651370 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 1651311 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 1651251 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 1651191 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 1651131 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 1651071 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 1651013 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 1650955 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 1650897 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 1650838 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 1650779 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 1650718 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 1650660 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 1650601 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 1650542 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 1650483 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 1650424 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 1650364 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 1650301 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 1650242 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 1650184 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 1650127 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 1650063 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 1650005 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 1649947 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 1649889 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 1649831 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 1649772 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 1649713 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 1649652 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 1649591 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 1649531 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 1649472 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 1649412 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 1649352 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 1649287 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 1649227 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 1649167 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 1649109 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 1649050 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 1648992 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 1648933 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 1648873 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 1648813 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 1648751 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 1648689 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 1648630 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 1648572 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 1648513 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 1648451 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 1648392 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 1648333 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 1648269 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 1648211 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 1648150 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 1648090 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 1648029 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 1647971 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 1647911 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 1647850 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 1647790 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 1647731 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 1647673 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 1647612 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 1647552 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 1647491 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 1647433 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 1647372 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 1647315 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 1647256 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 1647194 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 1647133 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 1647072 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 1647012 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 1646953 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 1646893 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 1646830 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 1646771 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 1646712 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 1646649 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 1646587 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 1646529 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 1646470 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 1646411 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 1646351 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 1646290 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 1646228 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 1646167 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 1646106 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 1646045 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 1645984 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 1645926 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 1645867 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1645806 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 1645746 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 1645685 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 1645626 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 1645567 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 1645507 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 1645448 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1645387 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 1645329 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 1645270 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 1645209 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 1645148 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 1645088 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 1645029 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 1644969 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 144 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1665896-1671555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020363.1 Sulfolobus acidocaldarius strain Y14 13-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 1665896 24 100.0 39 ........................ CACTGCCGTTTCGACGAGGCCCAGCAACTTCTCTAGGAT 1665959 24 100.0 40 ........................ AAAGGAGATTGACACCCCGGTAATGTTCTACTATGTGAAA 1666023 24 100.0 36 ........................ GAAGTCTTTCTTCAATGTCGAGGACTGTGCACGTAA 1666083 24 100.0 36 ........................ AAAGTGACTGACTACAAGGCAATTGTTGAAGTACTT 1666143 24 100.0 35 ........................ TTAGTGACCGAAAAAGATAGAGAGATTTTTGACAT 1666202 24 100.0 33 ........................ CATATTCATCAAAACTTCAAGACTACCTATACG 1666259 24 100.0 36 ........................ ATCTGTTATATCAACAATCTCTCTATCTTTTTCAGT 1666319 24 100.0 40 ........................ GTAAAATCATATTGAGTATTTTGTTTATGCGATTTATGTT 1666383 24 100.0 35 ........................ GTTGAAAAGAAGAGAGTTCTACTTATTCTACTTAT 1666442 24 100.0 35 ........................ ATGCGTCCTGGTTAGGTAGATTATAGTCCCTCCTA 1666501 24 100.0 35 ........................ TAATTAGATTTTAAAGCGTTATATGCTACGCTCCC 1666560 24 100.0 37 ........................ TGTCCAATTCTTGTAAGAATTCTTTCTGACTTTGGGT 1666621 24 100.0 36 ........................ ATTGATGAGGCAAGGGATCAAGGTGAGCTAAACGTT 1666681 24 100.0 37 ........................ AGAAGGTAATTGAAATAGGAGGAGGTAACGGGTATTT 1666742 24 100.0 38 ........................ TTCAACAACCCTGCCAGTATAAGACCTATCAAAACGTC 1666804 24 100.0 35 ........................ CTATAAAATTTTGCAAAAGGTTGGTGAGGAGAAGT 1666863 24 100.0 36 ........................ TTGCTACAAAGTTCCCCATGTGTTTGTAGGGGTAAT 1666923 24 100.0 36 ........................ CCTTACTGTATTGTATGGTATATCAGCTTCTTCACT 1666983 24 100.0 36 ........................ TGTCCCATTTACTACATCAAATTGGAAAATGTTATA 1667043 24 100.0 38 ........................ ATTAATATAGCACCACCTCCTAAAAGAGTAATTGAAAT 1667105 24 100.0 38 ........................ ACTTATGTTTATGAGTATTACGCGATGAAAGTTTGGGG 1667167 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1667227 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1667287 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1667345 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1667408 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1667466 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1667525 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1667585 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1667644 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1667702 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1667761 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1667821 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1667879 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1667941 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1668001 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1668059 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1668117 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1668180 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1668238 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1668298 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1668361 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1668422 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1668479 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1668539 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1668597 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1668659 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1668717 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1668777 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1668835 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1668898 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1668961 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1669022 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1669080 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1669141 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1669201 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1669263 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1669323 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1669382 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1669440 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1669500 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1669560 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1669619 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1669680 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1669739 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1669802 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1669861 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1669918 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1669976 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1670035 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1670095 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1670154 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1670212 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1670273 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1670334 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1670393 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1670452 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1670510 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1670569 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1670628 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1670687 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1670749 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1670809 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1670869 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1670928 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1670987 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1671048 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1671111 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1671172 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1671231 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1671291 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1671351 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1671412 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1671472 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1671532 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 95 24 99.8 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1782128-1781849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020363.1 Sulfolobus acidocaldarius strain Y14 13-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 1782127 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 1782065 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 1782004 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 1781938 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 1781874 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 1822171-1821513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020363.1 Sulfolobus acidocaldarius strain Y14 13-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1822170 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 1822106 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 1822039 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 1821975 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 1821913 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 1821850 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 1821789 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 1821723 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 1821661 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 1821598 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 1821537 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : TTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //