Array 1 66427-65005 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOS01000006.1 Companilactobacillus keshanensis strain 33-7 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66426 36 100.0 30 .................................... TGACCCTTCCAATTTCTTAGTAAGGACTAA 66360 36 100.0 30 .................................... TCATAGCAAGAATATTATTCCAATCCAAAT 66294 36 100.0 30 .................................... GGTTCGCCAGTCTTTTCGTTCCAAACGTAT 66228 36 100.0 30 .................................... ATTTACTGGGGTAAAGCAGATGATTGATGA 66162 36 100.0 30 .................................... CATTTTTAAATGACAGTTCATTTACACATA 66096 36 100.0 30 .................................... TTACTAACTTATAAGCACCGAAATCTTTAT 66030 36 100.0 30 .................................... ATTGATTTTGTATTCTAGTGTAAAACTAGG 65964 36 100.0 30 .................................... CAGTAACCCACAAAAAAAGCGAATTTCATT 65898 36 100.0 30 .................................... ATCAAACACATGGTAGTTTTCCTACTGTTG 65832 36 100.0 30 .................................... GAATTGTTAATCAAACTAATTTGTTAATTG 65766 36 100.0 30 .................................... ATAATGTACCTACAATCCCATCGGATCCGT 65700 36 100.0 30 .................................... TGTATTAGCTGAATCTGGACGTGATATGGA 65634 36 100.0 30 .................................... AAATATGATGATTAATAAGGTTAAGAAGAG 65568 36 100.0 30 .................................... TTTGAAACTACTGACATTACAGCATTTCAA 65502 36 100.0 30 .................................... GAAATTATAAAGGTATGATATATTCAATCG 65436 36 100.0 30 .................................... TTTGAAACTACTGACATTACAGCATTTCAA 65370 36 100.0 30 .................................... AAATATGATGATTAATAAGGTTAAGAAGAG 65304 36 100.0 30 .................................... TAATGATTTTAAAACTCCGTCTGATCCTAA 65238 36 100.0 30 .................................... AACACTAGAACAATATCGCATTCTTGGTGA 65172 36 100.0 30 .................................... TCTGAAGATAATTAAGTTACCAGCTGGCAC 65106 36 100.0 30 .................................... TATTACTAACATTAATCTTGATTGCCAACT 65040 36 69.4 0 A....CA.........A..C.C..C.TC.T.....T | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.6 30 GTTTTTGTACTCTTAAGGATTTAGTAATAGTAAAAC # Left flank : AAATTAAAATTGAGTAAGAATAGCCATCCGACTTGGTTAGTTTTGTACAATGTTGATAGTTTTATTTCTCAATATGAAAAAAATAACTTCTTTATCAAAATAAAAAAGTTATTGAGTGAATATGATTTGAAGGTAGTTTATATTGGCAATAATCTTGAAAACTTACCAATAGATACAATGGATTTAGAAAAGATTGTCGTGGCCGCTGATGAATTTGATCAGTTATTGCCAACCGATGAGTTATTACATTCTGTAAAGAATAACTATCCTAATGAATTTAATAGTAGTGAAGAAAAATTTGTTGAATCTATGCAGCGAATTATTCCCTATATTGGAATTAAAGAAAAATTGTTTCTTAATAACAAGGATTTGGTATTATTGAAGGTAGTAAATGAGATTCTAAACTACGAGACGTCGTTTAGTTTTGAAGATCAGTTACTGACAGATGCAGAAACCAAATTTTTGGAGGATTGATAACGTGTTGATTTTTTGAATTTGAG # Right flank : AATTAAACACGCCAAATGTAGGCGTGCTTTTTCTATCTCCAAATTCTCAATTTGTTAAAATAAAGAAAAAAGGTGATTTACATGACACAACTTCTAGCCATAATTGCTCATCCCAAAACTGATAAAGTATCAACAAGCATCAAGCTCTATCAAAACTTCATAAGAGAGTATCAAGAATCAAATCCTAACGATACAATTATCGAGCGCTACGTTTCTGAAGAGCCACGCCTACCATTTGATGAAACGGCTCTGTCTATATATAACAAGAAAGCTAGTGGAGCCAAATTTACTAGGCACGAGCGAGCGATAAATGTGGCCCGGCAACTATATGTTGATGAGTTTGTTACTACAGACAAGTATGTTTTTGTAAATCCTATGTATAATTTTTTTCTTCCAGCAGAAATGAAGAGTTATTTAGATCTCGTCATGCAAATTCCAGATACTTTTGAATATGACAACCATTCAAAACTACAAGGTAATTTGCACGCAAAAAAGGCACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAGGATTTAGTAATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 118683-117525 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOS01000003.1 Companilactobacillus keshanensis strain 33-7 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118682 36 100.0 30 .................................... CACCACCATTGATATAAATAAATATGTTAG 118616 36 100.0 30 .................................... AATAAGGAGGTGAAATAATGGCTCAAGTCG 118550 36 100.0 30 .................................... TAATAGTGCCAATTAAAATGACAATATATT 118484 36 100.0 30 .................................... TAATAGATTCTAACGGTCAACAATACACGA 118418 36 100.0 30 .................................... AAACATTTGTCCAGACATCAAAGGATTAGG 118352 36 100.0 30 .................................... GATATTAAAGCTAGAATCATTGAAACAACT 118286 36 100.0 30 .................................... AATGGAATACTGATCAGATACCAATGTCGA 118220 36 100.0 30 .................................... TAAATACGCATTCAATTGTTTACGTTGACC 118154 36 100.0 30 .................................... ATTTGAAAGATTCATGTTTCCCATTCTGGT 118088 36 100.0 30 .................................... CTGAGTAACCACGCTTTACTAATTCTTCCA 118022 36 100.0 30 .................................... CAAAACAATAATAAAGAATTCAACGATGAT 117956 36 100.0 30 .................................... ATTTCAATGTAACTGATCAGTATCAAGATA 117890 36 100.0 30 .................................... ACGGTCTGCCTATGTATAGGGTCTCTAATG 117824 36 100.0 30 .................................... TAATCTTAAGAACACCTTGAGCTCCATCAA 117758 36 100.0 30 .................................... CATGGGTTGGAAGAACATCGAATTACCTAA 117692 36 100.0 30 .................................... AATTATTCTAGACGATTAGAGGTGGTGGTT 117626 36 100.0 30 .................................... GGAAGCAAGCGTCATTTAAGGGTGAAGAAC 117560 36 86.1 0 ...................C......A....TC.T. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTTTTAGAAGTAAGTCATTTCATTTAGTTAAGAACC # Left flank : CGAATTAACTAGTTATAACATCAATTCCATCAGCAATATCAAACTTGTATTAAAGAAAATGATTTCTGATTCTATCATCTACAAAAATAAAAGTGATCAAATTAACCAAAATTTAAATGACCTAATAATGAATATGGTCAGTGGTTACGATGAAATATTTGATTTTGAATTAGCACCAGGATTAGAAAAGCTTGTTAAATCTAAAAATCTCAAGATGGACACTAGTAATTGGCAGAACTATTATGATAAGCTTCAGTCAGTTATAGAATTTTATGTAGATTTCAGTAGTAAAGAAATGTTAATATTTCACGGTTTAGAACGCCTTTTAAATATTAATCAATTAAATGAATTGAATGATTATCTAAAGGCCAATAAAATAAGCGTTGTAAGTATAGAATCCTACCCAATGGTCATAAAAAACGATAAAATAAATTTTAGGATTTATTCTATTGATGAAGATCATGTTAGATTTGATACTTAAAGTTAACGTTAAGTAAGTG # Right flank : AAGTCTAAATTATTAGCATAAAAAAGGAGAATCGACTCAGGCAATTGAGTTGATTCTCCCTTTTCATACCTATTCTTCTTCATTCAAAACCTGTTTAATTGCATCATACCGATAACCTTTACTCATCAAGTAAGTAATCAATTTGGAACGGCTATCATATCTATGACTAACTTTATCAACCATCTTACGAAGATTTTCCAATTCGGTATCGTCATCTTTTTCCAAATCTAAGTTATCAATTGCTTCATTGACAATATCGCCACTATACCCCTTTTGATACAATCCTTGTTTTATCTTGGTCATTTGCTGCTGAAATGAAGCTCGGCGTTGTTTCCTAACTTGCTTCTCAGCAAATTCAGTTGCGTTATCCAACAATTTTTCTTCATCTATTTGTGCCATTTTATCTTGAATGATCAAGTTAGGAACACCTTTTTGAATCATTTTTTGTTCTATGATCTTGGGCCCATTTATGGTCGTATTAAGTTGTGTATTGATAAAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTAAGTCATTTCATTTAGTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //