Array 1 212325-210586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBB010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS4 YZU2068_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212324 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212263 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212201 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212140 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212079 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212018 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 211957 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 211896 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211835 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211774 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211713 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211652 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211591 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211530 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211469 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211408 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211347 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211286 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211225 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211164 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211103 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211042 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 210981 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 210920 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210859 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210798 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210737 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210676 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210615 29 93.1 0 A...........T................ | A [210588] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229786-228965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBB010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS4 YZU2068_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229785 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229724 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229663 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229602 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229541 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229480 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229419 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229358 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229297 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229236 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229175 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 229114 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 229053 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228992 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //