Array 1 193351-192330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRJB010000004.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-055 tig00000064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 193350 26 100.0 41 .......................... TAGTCGGACATAAGAGCTTTATCGCTTGTGGGTGTGTCTCG 193283 26 100.0 42 .......................... TTTGTATGTTATAGTAAACAAAATATTTTGCGCAGCGTCTCG 193215 26 100.0 39 .......................... ATATCCAAAAATATGCAAATCGACTTGATGTTTGTCTCG 193150 26 100.0 40 .......................... ACGTGAAACATATGTCAAACGTTTGACATAATCGGTCTCG 193084 26 100.0 40 .......................... TTTTTGCTTTTTACTTTTATCTGGCTTTAGTAGCGTCTCG 193018 26 100.0 41 .......................... TCCCCTATTGGCAACATAAGAACCATGATAAAATGGTCTCG 192951 26 100.0 41 .......................... AATGTTTCACTTGATTATTTTAATGATGAGGAAAAGTCTCG 192884 26 100.0 40 .......................... TAGGATTGATTTTAGCTCAAAGAGCAGATAGCCAGTCTCG 192818 26 100.0 42 .......................... ATCGTTTATGCAAGCCTATAACATTGATTTGATTGAGTCTCG 192750 26 100.0 40 .......................... CAGATAGAACTTTGGAACCATACTGATAAAGTTTGTCTCG 192684 26 100.0 40 .......................... TAGCTACAATATCAACAGTCACAGACTTAACGACGTCTCG 192618 26 100.0 39 .......................... TATTGGTCGTACATCAATCAATTATGGCAGTCAGTCTCG 192553 26 100.0 41 .......................... TCCGTCTCGAGTGTTTACTGAGTACGGCAGCCATAGTCTCG 192486 26 100.0 40 .......................... TAAAATATCAGCGTACTCAGACATCACACGTCTCGTCTTG 192420 26 100.0 39 .......................... AAGAAGCCAGAGATCGTATTGTAAAAGACTATGGTCTCG 192355 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 16 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATACTGGGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTGCTGCTATACAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 627866-627236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRJB010000007.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-055 tig00000214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 627865 36 97.2 30 ..................A................. AATCTCATCGTGCAAGAACCCTGTGTCATA 627799 36 97.2 30 ..................A................. CTAAAATAAAAAGACCTTCGGAGATCGGAC 627733 36 97.2 30 ..................A................. ACGGAGCAATCACCATCGGGACTAATGAGG 627667 36 97.2 30 ..................A................. CTTTAGGGTCTTTGAGATTACTAAGCGACA 627601 36 100.0 30 .................................... TACCTCAACGATCTAAACGGTACCAAGATA 627535 36 100.0 30 .................................... ATGCTTACAGTTAATTCCTAAGCACCCCTC 627469 36 100.0 30 .................................... TGCCATTTTTTAAAATTACTACTCAAAAGA 627403 36 100.0 30 .................................... ATATATAACCGAAAAATGGGATTTTGTATT 627337 36 100.0 30 .................................... ATGGCCGCATGCACTATACATTTACCGCAA 627271 36 88.9 0 .............................TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTAGAGTTATGCTGTTTTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGTTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGTTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTGTCATGCCGAGAGTTTGTTGGTTAGTTCTTAGTAGCTCAGCAAGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTTTTGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //