Array 1 50-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOM010000027.1 Bartonella sp. B10834G3 NODE_68_length_266_cov_219.524862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 .................................... GAGCAATGGTGGCAATGGTTCGCGTCATTT 116 36 100.0 30 .................................... CCGCCAATATGTTAAGGCTTTCGACATGAC 182 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCTAATCTGTTACAACCGGATCGTCGTCATTGCCGCGCGGACTTTTG # Right flank : TCTTTTTCACCGGACTGGATATCGCCGCCTGTTGCGGCTTGACCGCATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 194976-195143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOM010000003.1 Bartonella sp. B10834G3 NODE_3_length_315135_cov_176.332081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 194976 36 88.9 30 ACA..C.............................. AACAGGCAAAAAGCCCAAGCAGATAAGTCT 195042 36 100.0 30 .................................... TAATCCGCCCGTAAATGGCGTATTCTGCGG 195108 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCAAAAGAAGTTTATGCCCATTTCGGATTTCGGAAGGTGCTGATGGCAGGCTCTATCGTCTCGGCAATGTTTACCGCGTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTCTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCACTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCCAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGCCATGCTTTGAACGAAAAGAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : TAAATCAGCCGGGTATCGCTTATACCATGGGGTTGCGGCTTGACCGCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTAATCTGTTACAACTCTTTTTCACCGGACTGGATATCGCCGCCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTATCAGAAAGCTTGTAAAAACCCCATTTTAGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCATAAATAAATGTGTCATAAGCGTCGTTTTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACAAAAAAGCCCGATGCCGCTTTTGCTGTTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCCACCCCCAACGCCCTGTATCGTCAAAACGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACT # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 195342-195838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOM010000003.1 Bartonella sp. B10834G3 NODE_3_length_315135_cov_176.332081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 195342 36 100.0 30 .................................... TATCAGAAAGCTTGTAAAAACCCCATTTTA 195408 36 100.0 30 .................................... CATAAATAAATGTGTCATAAGCGTCGTTTT 195474 36 100.0 30 .................................... AAAAAAGCCCGATGCCGCTTTTGCTGTTCT 195540 36 100.0 30 .................................... TCCACCCCCAACGCCCTGTATCGTCAAAAC 195606 36 100.0 30 .................................... TGTATTGTTTTGTTATATCTGTTGAAAACA 195672 36 97.2 30 ....T............................... TCGTGCTTTGATATTGACGTTTGACGTTAT 195738 36 100.0 29 .................................... AGTATCAATCCGCCCTCGATAGATTGTAT 195803 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGCCATGCTTTGAACGAAAAGAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCTACAGCCGCTTGACCGCATTTTCTAATCTGTTACAACAACAGGCAAAAAGCCCAAGCAGATAAGTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTAATCCGCCCGTAAATGGCGTATTCTGCGGGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAATAAATCAGCCGGGTATCGCTTATACCATGGGGTTGCGGCTTGACCGCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCTAATCTGTTACAACTCTTTTTCACCGGACTGGATATCGCCGCCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGCTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTGCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTATCTTCCAAGCTTTTCCTGAAAATCTTGCAAGATTTTCACATTGCTTGCCAATTCAGAAAGGTGGTTAGTCTCTCACTAATTGAAACACCTCCTGTAATTGGCATTTAGTAACAATGAGCAACCTATAATCAGTCCTTATCGTCTCTGCTGTTCCGGAAGTCACTCGCATACCCCATAAAATCGGGAGATTGATAATGATGAGCGAGCATCAAGGCAAAAAACGGATAACCGACATTCGATACAGAAGAAACCTGCCGCAAGCCATGACAATTTACAACGTATAAAACAAACAAATCCCGATAAAAATCAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGAGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 197680-198826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOM010000003.1 Bartonella sp. B10834G3 NODE_3_length_315135_cov_176.332081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 197680 36 94.4 19 CC.................................. TATCAATATTTGCGATTTT Deletion [197735] 197735 36 100.0 29 .................................... TTAGTGCGGGTTCATAATCGCGCAAGTTA 197800 36 100.0 30 .................................... CATCAATGCGGCAATACCAATTGCCAAGGC 197866 36 100.0 31 .................................... TAGTACTGCCAACTATTCCCCTACCCTTACA 197933 36 100.0 30 .................................... TTGACGCGATTTTAACAATCGGCAACGAAA 197999 36 100.0 30 .................................... GTTGCGAAAATTACTTCGAGTACTAGGAAT 198065 36 100.0 29 .................................... AAAATATATGCTGCCCACGCGAATGACCC 198130 36 100.0 30 .................................... GGCGGTTATCATGATACCGGCTGCAATTGT 198196 36 100.0 30 .................................... CAAGCGGCTATTATACATTTATCGCAACTA 198262 36 100.0 30 .................................... GATGGGTGCGTCGTGCAAACAAAACGTGGT 198328 36 100.0 30 .................................... CGAGCTAATAGAATTAAGGCTAGCTAGTCG 198394 36 100.0 30 .................................... TAACCTGTATAGTTACGTTACGTCTTGATT 198460 36 100.0 30 .................................... CGAAAATTTCGAACGTCGCTTCATGCGTGA 198526 36 100.0 30 .................................... GTTCCAAAGAAACATCGTTAATTTCGATAC 198592 36 100.0 30 .................................... TGACGAAGCTGAAACCATCTTGACGCCGGT 198658 36 100.0 31 .................................... GTATCTATACCAGATAGCCGATGGGCCGCGT 198725 36 100.0 30 .................................... TTCACCAAAAAACAAGCGAATGGCTGAGGT 198791 36 97.2 0 ..................C................. | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.5 29 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TCACATCCATTTTGTTCCTCCCCTTGCAATGCAACACCGGTTGAACATTTACACACACTAGCGTCGCTGCTTGCCCCCATTTGCTAATCTAATATAATTTAACCATCATAGTAATATTGACTTTAAATCGGGGTAACCAATGAAAAACTTGTCGCATCTCTTATAACAATTTCTCGTATAACAACATAATCCGTTATAATTACCGGTTTTGGAAAGTCAGAAAAACAAAAGCAAGAAGAAGCCGCAAAAGCGTTTTTATCGGTTAAACTCCGCAATGCCCCAAACAAGAGCTACTGAATATGTTACTGTTTCGTTTTCTTGATCCATTATTCTTAATCTTAAACATGTTCGCTGTGTTTATGTGGGGATTATATTTGCTTAATCCGTTTTTTGCATTTGTTCCATTTCACGTTGATACAGCACCGATTGCCCTTACTTTTTGGTTAATTGTCTATATCGCCGTTAAACGCTACTTCCGTCGCAAGCGTTGGATGAAATAA # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATACTGTTTTTCATTAAAATAACACCAATAAATTTCGATTTTTTTTGGCGTGTCTTCCACGTTTTGTCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAACTTTCATCGTTCGGGCAAGGTAGAAGTGGGCTTACCAATACAGGATAAGCCGACATGTTCGGGCTTGTTTTTACAAAGACCTCAAGCAATTTAGTGAACCGCTGTTTCGACTTTTTTAAGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGCCGTGCTACCTAACAAGCAGCCCGCTTTGATAAAGTGGGCTTAAGACAGCATGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGGTTTGCTTTTGTCAATTTTTATGCGTGGCTAAAACTGAACGAGCCTGCACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 201620-202517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOM010000003.1 Bartonella sp. B10834G3 NODE_3_length_315135_cov_176.332081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 201620 36 94.4 30 A.G................................. CGGCTTCCAATGGATTGTTTTGGCGCATGT C,C [201623,201626] 201688 36 100.0 30 .................................... ATGGAATGCCATTGATGCCCCTGCCTTTAG 201754 36 100.0 31 .................................... GTGCTCAACAGTCTGAGACGCGCCTGATCTA 201821 36 100.0 30 .................................... AAACAAAGGAATAACGATGATGTCTCGCGT 201887 36 100.0 30 .................................... AATTTTGCTTAACTGCACCGCTGCAAAACC 201953 36 100.0 30 .................................... GAAGCGGTTGATTATTGCGAGAAGCTTAAC 202019 36 100.0 30 .................................... CTGTCATGACTATTCGTGCGTCACCCCATG 202085 36 100.0 31 .................................... TTGGTGGATTATACCTAACCTTCTTGTATGA 202152 36 100.0 30 .................................... CTGTAGGTCTCGTCACTATCACTGCTTCTG 202218 36 100.0 30 .................................... CAAAAGCTGAATTGATTACTGAATATTCTA 202284 36 100.0 30 .................................... TGAACCGGTAACGGCGAACAAGCTTGATAG 202350 36 100.0 30 .................................... GGGAGTAATAAAACCCCCCCTGTCGGGCGA 202416 36 100.0 30 .................................... AAACGCATGGTTGATTTCAAGTATCCTGTA 202482 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CACAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCGAAAAACCGGATGCATTTGACAACAAACCATTTTTTGTCGGGCAAACAGCAAAAGAGCCGGAAAACTCTGATGCTTTTAAAAAAACGCGCCCGTGGCCTCGCGCAAAATGAACAAAACAGATTTGAAAGGGTGAACGGAATTTTCCAAAAATTAAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTATCAAATAAAGTTCGCCTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTTGAAACGACTTCTTTAGTTATGCACCCGTTCGGA # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTAATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //