Array 1 2307-2579 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAB01000202.1 Escherichia coli strain A430 NODE_33_length_53433_cov_78.1579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2307 29 100.0 32 ............................. CCGATCACACGCTCCCACGGGCCGTACCAGTC 2368 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 2429 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 2490 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2551 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23631-24392 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAB01000202.1 Escherichia coli strain A430 NODE_33_length_53433_cov_78.1579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23631 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 23692 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 23753 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 23814 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 23875 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 23936 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 23997 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 24059 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 24120 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 24181 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 24242 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 24303 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 24364 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACGGATGAACAAGTCAATAAACTTCAGGCCTACTGGGGAATGCCACGACGTATACGTATTGATTTTAAGACAACCTCAATAGGTAACTGCGACATTTGCGGTAGGCAGAGCGATGCTCTTTTGGGCTTGATGTCACTCAAAAACTATGGTGTTCAATACGTCATGTGGCGCCATCCTCTAACACCTTACCGTCTGCCGCTTAAAGAGGGTGGAGATTTTTACTCAGTTAAACCACAACCTGGTGGTTTAATCTGGCGCGACTGGTTAGGCCTCATAGAGGTAGGTAACTCAAAAAACAATACTGAACTCCCCGCACAGGTCGTGAAACTTTTGAATGCCAGCAATCTAAAGCAGACAAGGGTGGGCTTATGGGGATTTGGTTTTGATTTTGAAGATATGAAGGTTCGTTGTTGGTATGAACACCATTTCCCGCTGTTGTTAAACAAAAAAGAAGACCTAATAAACCGCGCGTTTCTGGAACCGTAATTTGCTGCGGTAT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //