Array 1 1317304-1318953 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134169.1 Actinobacillus lignieresii strain NCTC10568 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1317304 28 100.0 32 ............................ AACATTAAAGAACATTTACAAAATAGGTAATC 1317364 28 100.0 32 ............................ AAATGAACCAAAATTAAAACTTGTTGCTTAAT 1317424 28 100.0 32 ............................ ATCATCATTGCACTAGTTGAGCCCAACACTCC 1317484 28 100.0 32 ............................ TTTGACCGCTGTAACAAGCGGTCTTTTTTTAC 1317544 28 100.0 32 ............................ ATACAATTTCTTGATGATAAAGGCGATTACGA 1317604 28 100.0 32 ............................ TTATTGCCAAGTGAAGTAATGACGAAATGGGT 1317664 28 100.0 32 ............................ AATAAGGTTGCCGCATACAAAGTAATTAATTT 1317724 28 100.0 32 ............................ AAGAAGATTGCTTAGTTCGATTAAAACATCAT 1317784 28 100.0 32 ............................ CTCCATTTGTTCGAATATAATGGTTTGGTAAA 1317844 28 100.0 32 ............................ AAAATCGATTTCTATACACTATTCGATAACTG 1317904 28 100.0 32 ............................ AACTCCGGCATATACTAATAGTGACATAGACG 1317964 28 100.0 32 ............................ TTACTGAATTTATCAGAATAATAGGCTTTTAA 1318024 28 100.0 32 ............................ AGGCACAGAATCTTTTTGTAGCAACCACTTTT 1318084 28 100.0 32 ............................ CCAAGCGAACATTGAAGCTATACTCCCCTCTA 1318144 28 100.0 32 ............................ GTTATGTCCGGAGGAAACCACATTAATAAAAT 1318204 28 96.4 33 ....................T....... TTGCCGAGGTGCTTTTTCTTTTTCCTTTCACTT 1318265 28 100.0 33 ............................ AACCACGCCCAAGCTATACATCGTTCAAAATCA 1318326 28 100.0 32 ............................ TTTCTTTCCTCTATCATATCCAACCACGCCCA 1318386 28 100.0 32 ............................ GCCGGAACCTAAAAGAATCGATAAAGACACAC 1318446 28 100.0 32 ............................ TATCCTGCTTTAGAAAATTTGAAGAACTAGCC 1318506 28 100.0 32 ............................ TGATGAAATCATTAACAGCCCGATTGCCCGTG 1318566 28 100.0 32 ............................ AAGTTTCGCTAGGTGCTGGCGGCGCGAACATC 1318626 28 100.0 32 ............................ TCCTCAAAAGGTCAATAAAAAATCTTTGTTAA 1318686 28 100.0 32 ............................ ACCGAAACGTTTACCCCATTTTTCATCAACCC 1318746 28 100.0 32 ............................ AGCGAATAAAAAAATATCGAAGTTAGATGGAT 1318806 28 100.0 32 ............................ AACAATTCGCACAATGCCATCTTCGATAGAAT 1318866 28 100.0 32 ............................ GCCGGAACCTAAAAGAATTGATAAAGACACAC C [1318874] 1318927 27 89.3 0 .....................-C.C... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGATTCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : ATCAACAGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCGATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTGCTTCGAACTTGGAATAAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //