Array 1 8985-7369 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTE01000007.1 Salmonella enterica subsp. enterica serovar Infantis strain inss21 scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8984 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 8922 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 8861 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 8800 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 8739 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 8678 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 8617 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 8556 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 8495 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 8434 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 8373 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 8312 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 8251 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 8190 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 8129 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 8068 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 8007 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 7946 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 7884 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 7823 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 7762 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 7701 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 7640 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 7579 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 7518 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 7457 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 7396 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31923-30025 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTE01000041.1 Salmonella enterica subsp. enterica serovar Infantis strain inss21 scaffold_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 31922 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 31861 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 31800 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 31739 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 31677 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 31616 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 31555 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 31494 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 31433 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 31372 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 31311 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 31250 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 31189 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 31128 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 31067 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 31006 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 30945 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 30884 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 30823 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 30762 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 30704 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 30643 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 30582 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 30521 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 30460 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 30399 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 30338 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 30277 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 30176 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 30115 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30054 29 93.1 0 A...........T................ | A [30027] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //