Array 1 111523-113719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYF010000002.1 Listeria booriae strain FSL L7-0255 NODE_2_length_387359_cov_44.119159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111523 30 100.0 35 .............................. GCGAAATCAAGCAAGTCATCGACGACAAGCAATGG 111588 30 100.0 37 .............................. CGCGCAACAAGTCGAAAATCTGGTCGCGACTGGCTTT 111655 30 100.0 35 .............................. GTTTCCATCCTTTTTTGGTTTGTTGCCATTTTCGC 111720 30 100.0 35 .............................. TCAAAAATCTTATTTTTATGTTTGTCAATTAATCC 111785 30 100.0 36 .............................. ATGACTGCACGGACTTATCAAAAAGACGAGGCAATA 111851 30 100.0 37 .............................. AAACAAAAACCTATTTTTGTAAGGATTAGGTGCAAGC 111918 30 100.0 35 .............................. GTTGATTGATGTTGCGCAAGGCTTCTTGACTTTAT 111983 30 100.0 36 .............................. AGAACGGCACAAGAACAATTCAATACAGCAAAAAGA 112049 30 100.0 36 .............................. TCAGTTAGAGGTAGCTATGCGGGTTGCAGAGGATGC 112115 30 100.0 36 .............................. GATAAAAAGAACTCGCAACTTATCACACTAGATACA 112181 30 100.0 35 .............................. CTCATTGTATTCGCAATACCTCGACCTATCGCACC 112246 30 100.0 36 .............................. TATGTAATGGCTTGGGCTGGTGGCCTAGCTGGCGCA 112312 30 100.0 35 .............................. CTTGTTTATAAAGAGCTGTTGCAGTGGTAACACCT 112377 30 100.0 36 .............................. GAAAGAATTAGCCGAAGAAGTGAGTGCCGCACTCGC 112443 30 100.0 36 .............................. GTCGCAAATGCTGTTGTGCTACCATGTTTGTAAATT 112509 30 100.0 33 .............................. TTCTTCTTAGGGACTTGCCAATACACCTCTCGA 112572 30 93.3 36 AG............................ AGTTATCAGGGTTGTCCGCTTCCCAGTCATGAAATG 112638 30 100.0 37 .............................. TATTCTAGGTTCAACTATAAATAATACGAATGCTTTT 112705 30 100.0 36 .............................. CCTGTTAGATGCATTTTTATGTTTTCAGGAAGTCCC 112771 30 100.0 36 .............................. TGTATAAAAATAAGACACCCTACGTGATTGCTCCCA 112837 30 100.0 36 .............................. GAAGGCGTGGTGAATACTGGCGATTGGATTGGCTTA 112903 30 96.7 35 ........................A..... TATTGATGTACCATTTTCGGTTTAATTTATCGGGT 112968 30 100.0 36 .............................. TCCTTTATACTTTTAGTAAAGCACAATCTCCGCCGA 113034 30 100.0 35 .............................. TGGAAAACGCAGAAGGATGGGACACTGATTACTGT 113099 30 100.0 35 .............................. AGCATAGTTATTTAGCTTTATACGCCCCTCGATAG 113164 30 100.0 36 .............................. ACAACCGGCTCACTTCTAAAATCGTATGTGTGGCAT 113230 30 100.0 35 .............................. CTTATATTTTTAGAGGGAGAAGAAGCTGAAACCGC 113295 30 100.0 37 .............................. GGGGTTGATATAAATTATAGTACGGGTGAGTCTAGCC 113362 30 100.0 36 .............................. TACAAAGCAAAAGCAAGCCCACCAATTGCAAGAAGC 113428 30 100.0 36 .............................. ATCCAACTAATACTATTCCCAAAACACCCATTAAAA 113494 30 100.0 36 .............................. ATTGATTGATGTCGCGCAAGGCTTCTTGACGTTATC 113560 30 96.7 34 ........................A..... TATTTCTCCGTTCAGACATATATAGATGACAAGG 113624 30 96.7 36 ....C......................... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 113690 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGATTTGGTGGTGAGATTATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCATTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGACTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGTAGCCAGTATACTCTACTTTCTAGCGCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAGAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 133804-135807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYF010000006.1 Listeria booriae strain FSL L7-0255 NODE_6_length_201645_cov_40.748576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 133804 30 100.0 36 .............................. ATTGACCAGCTCGTGTTTGGGCTGGACGTTGTATAC 133870 30 100.0 36 .............................. CCAAGTAATCGGAGTACGCAAGCAAGTAATGGGAGG 133936 30 100.0 36 .............................. TTCTTTTTGTCATGGGTTCCCATTGTTGATAGAACA 134002 30 100.0 37 .............................. TTTAGCAGCTTTAAGAAAGTAATACAGCAATCCAACC 134069 30 100.0 36 .............................. ATTCTTCCGACTACGACCTATGCGACTGGTGTTGCA 134135 30 100.0 36 .............................. AGTGTTACTAATTGTAGATTGTACAGGAAAGGGGAA 134201 30 100.0 36 .............................. CCAGATTGTTCAGTTAGCGCGTGGTTAATCCCGATA 134267 30 100.0 37 .............................. GCTTTCGGAAGGTTTAAAAGGCGGTGCTAGTGATGCA 134334 30 100.0 36 .............................. GAAGGAAGTACAGAAACTGTACATCAAGAAGTACAG 134400 30 100.0 35 .............................. AAATCTTTTACAGTAGGTATTACGGTGTCTGTAAT 134465 30 100.0 36 .............................. TCTAAATTGTTGAACTGCTCTTCAATTGTCATAGTT 134531 30 100.0 35 .............................. CAATTAGATTAGAAATTGCTACTGCGTCAGCTGCT 134596 30 100.0 34 .............................. CTGAATCTTGTAATGCGTGCGTTCGAACGTCGTC 134660 30 100.0 37 .............................. CAACTCAGATATTATACATGTAAAACACATAGCTGGA 134727 30 100.0 36 .............................. GAAGTTGAAAATGAGCTAGACAAGCACCGGAAGAAA 134793 30 100.0 35 .............................. TAAACTGTCCTTGTCCCTAACTTACTACTAATTTC 134858 30 100.0 35 .............................. TTCCTTTTCTCACTTCAATATACTTGCCATTTATA 134923 30 100.0 34 .............................. GGTCAGGCTGCGTTACATAATCCAGACCAAATTG 134987 30 100.0 36 .............................. TAAACTCTTAAATGCCTGTATATCAATGAGACTGTA 135053 30 100.0 36 .............................. TCGAACGAAAACGTGCCAGAGCTAAAGCCGGTATTT 135119 30 100.0 36 .............................. AACACATTTTCCGCTAATTCACCTTTTTCAGTCGCG 135185 30 100.0 36 .............................. CAAACAGTTGGACGCGAGCCAATGATGCAACAATTT 135251 30 100.0 36 .............................. CAAAATAAAAAACGGAAAGAAGGAATTAGAAAATGC 135317 30 100.0 36 .............................. AGTCTAGTCTTCAACGTATAGAAAAAGACGATCAGA 135383 30 100.0 36 .............................. CATTTGGATAACGGCATTACCCTCAGTTATTTGTAA 135449 30 96.7 37 ........................T..... AAATAGAGTGCTAAATCTACATCCAGATTGGCGTTTG 135516 30 100.0 34 .............................. TTGTGATCTGTAAGAGTTTTAAATGATTCTCCGC 135580 30 96.7 36 .............C................ GGCTATCACGCACCCACATAACTTTTTGTGAACGAA 135646 30 96.7 36 ............................G. GTTGCTGGCGTCGGTTTTGGATGTTCGATGCAAAAG 135712 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 135779 29 83.3 0 ..C..............A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGATTGCTCACAAATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGTGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTAAGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 355922-359124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYF010000004.1 Listeria booriae strain FSL L7-0255 NODE_4_length_374369_cov_49.479842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 355922 36 100.0 31 .................................... ATGGTTATGGTTCAATAACTTCAAGGGCTGA 355989 36 100.0 30 .................................... TGCGTAACACGAATATATCGCAAAGGAAAT 356055 36 100.0 30 .................................... TAATGGCGTCGGCATTTGCAAGCGGTTTGT 356121 36 100.0 30 .................................... CGTGTTTCAAAATCAACTGCCATAGACCGT 356187 36 100.0 30 .................................... TGGGGCTTATTCCAGAAGGCACGAAGGTCA 356253 36 100.0 30 .................................... TGGTAATAGTGCTTCTGTACCACCCGTTGT 356319 36 100.0 30 .................................... TCGATACTAGCAAGTTAGGGGTGCCTGTGA 356385 36 100.0 30 .................................... CCAAGGTGGGATTGAACCTATTGACTTCAT 356451 36 100.0 30 .................................... TAGTAACATCAGGTGGTGATTTAGCGGCGC 356517 36 100.0 30 .................................... TAGTAGTCAGATGCACGTTATATCGACTGT 356583 36 100.0 29 .................................... CCATGACAAGCTTTACAATTCAGTCTATA 356648 36 100.0 30 .................................... TAGCGATTTCGTGTTTGATTTCTTCACAAG 356714 36 100.0 30 .................................... CTTTCATTTGTACAAGTTTCAAATAGTCAT 356780 36 100.0 30 .................................... ATTAATCGTTCGTTATCTAGCAATGGAACA 356846 36 100.0 30 .................................... TTCTTCTTGATACCAGTCGGCAATCATCGT 356912 36 100.0 30 .................................... CTGCTCTAATGTAATACCGTCAGCACCCTC 356978 36 100.0 29 .................................... ATAAGAAGTATTGTCCCTTTTGCATAGTT 357043 36 100.0 30 .................................... AAGTCTACCGTTGATGTTTTCGGCTCCTAC 357109 36 100.0 29 .................................... CTCCTTGTCCCGTAAAAGCATCGTCACTT 357174 36 100.0 30 .................................... ATTATCTGCTTCGGAATCGTACAGCTCTAC 357240 36 100.0 29 .................................... AGCATTGTGGTGGAGTAATGCTTGCGGTA 357305 36 100.0 30 .................................... AGTGAGGGAGTGAGAGGTGTGTGAGTGTGT 357371 36 100.0 30 .................................... ATCCTTTGTCGAATGATAGCGAACATGTCG 357437 36 100.0 30 .................................... TCTATGGATTATTGGATGAAGCAATGAATG 357503 36 100.0 30 .................................... TGTCGTTCAGGGTACTATTCCAGCGCCCTG 357569 36 100.0 30 .................................... CAGGGGCAGACGGTAAGATTCATATCGACA 357635 36 100.0 30 .................................... ATTGCCCATTGGGTCGGTCATGACCTCGAT 357701 36 100.0 30 .................................... GTGTACAAACGCTTTAAGGATAAATACCTA 357767 36 100.0 30 .................................... TTTCTTCAATAATACACGTTCTATGAGCTA 357833 36 100.0 30 .................................... AAACAATACTACTAGCTGATAGGCTGCTTA 357899 36 100.0 30 .................................... GTTAGTTTAAGTTTGTTTCTTTTACTTCCA 357965 36 100.0 30 .................................... ATAAGACGGTGACAAATGCGGTAGAAAGCC 358031 36 100.0 30 .................................... TGCTACAATAACACTCGCAATCGAAGCAGC 358097 36 100.0 29 .................................... TAAAGCGAATTGGGTTTGAATCGTGGTAC 358162 36 100.0 30 .................................... ATAGCAGATATGAATTAGCAAAAGCCGCAC 358228 36 100.0 30 .................................... CTAAAAAAGAAGGGCGCCTATTAACAGCAA 358294 36 100.0 30 .................................... AAAGGTCTTTCGCGTAGCTAGTAGCTGGGA 358360 36 100.0 30 .................................... AGAGATTTAACGAAGACAGAGCAAGCGATG 358426 36 100.0 30 .................................... AAAAAGCGTTAGGGGTGATCATATATCGCT 358492 36 100.0 30 .................................... TGTAACGGCGTACCTTCTACAGTGAACGGC 358558 36 100.0 31 .................................... TTGTAGAAAAACCTGAAAGTGAAGGGAAGGA 358625 36 100.0 30 .................................... TGTAACGGCGTACCTTCTACAGTGAACGGC 358691 36 100.0 31 .................................... TTGTAGAAAAACCTGAAAGTGAAGGGAAGGA 358758 36 100.0 30 .................................... TTATGATATGCGGCGACATGGAAGTGCTTG 358824 36 100.0 30 .................................... ACCAATGTAGTTTTGGTTTTCTACCTGTTG 358890 36 100.0 30 .................................... AGGTAGCTGATACGTTGCGTACCACTGTGT 358956 36 100.0 30 .................................... CGACTCCGAGACAGATTTATGCTGGACTAC 359022 36 100.0 30 .................................... CGTTAAGGGAGCCTTTAAAACCAGATGAAT 359088 36 77.8 0 .......................AAA..CC...CCA | G [359115] ========== ====== ====== ====== ==================================== =============================== ================== 49 36 99.5 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATATTGGGTATGAGTATAACAAAGCCAACCCTTGTGTTTGTGGAGGGATTTAGATCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACAGAAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTTTGCAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : ATGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCGACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTCGGGATCTAGCCGATGCAACCCATGTTAGCACAACGACGATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTACGCGCAGAATCGGACGAAAATCAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCAATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9986-10868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYF010000013.1 Listeria booriae strain FSL L7-0255 NODE_13_length_58378_cov_39.997461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9986 30 100.0 34 .............................. ATGGTTTAGAAAGCTACATTGGACATACATCTAC 10050 30 100.0 35 .............................. TTGTAACCCATTCGGCATAGCTGATATAGATTTGC 10115 30 100.0 37 .............................. AGCATAAACAACGTAATATCAGCCTGCGGGTTGACGC 10182 30 100.0 35 .............................. ATTCCTCGACAATCTGTATAGCGTTCTCGTTATAC 10247 30 100.0 34 .............................. TCGCTAAGTCATAGACATCTTGTACACCTAAACC 10311 30 100.0 37 .............................. TGACATACTGCGCTTTTAATCGTTTGACGCTATCGCA 10378 30 100.0 37 .............................. AACCACGCGTATCAATACACTGCGGCGGAGTATATCG 10445 30 100.0 36 .............................. TTGCCTTTATTAATCAGATATTCATCACTATATTTC 10511 30 100.0 35 .............................. CGTGTAATCAGCATTAAAATTCTCCTTCCTTCCAT 10576 30 100.0 36 .............................. GCAGATAAAATAGCTATTCAGGCATATAAACGAAGT 10642 30 100.0 37 .............................. CGTGATGAATCAAAAACAATGTCCCCTCTGCGGAACG 10709 30 100.0 34 .............................. TCTGGACACCCAAACACCCCATCTGTAGCATCAG 10773 30 93.3 36 AG............................ TAGTGTGCCAGTGCGCCACCTAAACTGTGCCCTGTA 10839 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.3 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTGGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAATCACCATAGATAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 17939-17507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYF010000017.1 Listeria booriae strain FSL L7-0255 NODE_17_length_37086_cov_43.470345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17938 36 100.0 30 .................................... CATCGATGAATTTCCAATTTATAATGGTAC 17872 36 100.0 30 .................................... AGGCGGTGACGGCTTTCATTTAACAGCCAA 17806 36 100.0 30 .................................... ATGACTATTAGAAAGTGGTGGGAGGATTGT 17740 36 100.0 30 .................................... ATGTGGATTTGAAGACACTGGCGCACCTGT 17674 36 100.0 30 .................................... TCATTTTGAATGAGTGAACTTTCATCAAGT 17608 36 100.0 30 .................................... AGGTGAATTGATTAGGCGAACAGCCTATAT 17542 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTTTTCGCCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGAAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATATCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTACCATTTAATTTTTTCCCACTTAAATGTCTAAATTTTTTTGGTTTTAGGCCTGCTATAACCAATCTATGTTTATTGTTTTTCAAGTTAGCAAATTCAACACTCATACCATGCCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTCAAAAATTTCTCTTAACCGCTCAGATAAATACAGCAACGTGTAATCAGATTTGGGTGATAAGTAATTTAAATGTGCTATACGATTCCTTGCTTCTTTCTCAGACACAAACAGTTCTTCTTTTTTCATGAATATATCCAACTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTTCACTCTCTCAGTAATTCCAGAACTCTTTAAATATTGATTCGCCATACAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //