Array 1 2000938-2002587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064653.1 Methylomonas sp. LL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2000938 28 100.0 32 ............................ TGTACGACCTCGAACAAGTTAGCAACGAAATC 2000998 28 100.0 32 ............................ ATTGGAGTTTCGCGACGAGCTTATTCGTCTGG 2001058 28 100.0 32 ............................ GGCGGGACGACAAATAATAGCGCGTCATTAGT 2001118 28 100.0 32 ............................ ATTAATCCGCTGACATTGACGTTCATTTAGCA 2001178 28 100.0 32 ............................ AAGGCCAGTCGCGCTCTTTGGTCAGTACATCA 2001238 28 100.0 33 ............................ CGTTTACTGTAAAACCAGCGGCATAAAATGGCT 2001299 28 100.0 32 ............................ TGGATAAATCGTTATCCCAGTCGATTTCTAGT 2001359 28 100.0 32 ............................ AGCAATTCCGCGTATTGCGCGGTCGTAACATT 2001419 28 100.0 32 ............................ TTACAAATGACGCGCCGACCAAATCTGGCTCA 2001479 28 100.0 32 ............................ TCGTAAAGCCTTGCTGTTGTCTTATGCATGCC 2001539 28 100.0 32 ............................ TGTAACGTACCCTCTCGGGCCTTCAACGCATT 2001599 28 100.0 32 ............................ GGCCATTCGACCGGATTGGATGAACGGCCATG 2001659 28 100.0 32 ............................ TCGTTTTCCAAAAACCTTTTCAGCCCATTGAG 2001719 28 100.0 32 ............................ GTTATCCTGATTCGCTATCCATTGGCGCCGAT 2001779 28 100.0 32 ............................ GTACACCCGAAGTTCTCCTGATTCGAACCGCT 2001839 28 100.0 32 ............................ GTTGTTTGCCATCGATACTCGCCCGGCAATGT 2001899 28 100.0 32 ............................ ACGAGCAATGTATTTATAAGCGAACTCGGATA 2001959 28 100.0 32 ............................ CAGGCCTTGGTCACTGGTTGAAATCATTGAAG 2002019 28 100.0 32 ............................ CCCTCGCCGTCGACGTTTTGCGTCATGCGGTC 2002079 28 100.0 32 ............................ AAGCACGATGCCCTGGCCGACGCCATCTACCA 2002139 28 100.0 32 ............................ TTTGCCGTGTTCTTGAAAATGGACCCCAACGC 2002199 28 100.0 33 ............................ GCTTGCCTTGGCTTGTCAGAAACGCATCCATCC 2002260 28 100.0 32 ............................ AGTTTCACCCGCCAAAGTCGGATTACGTCAAC 2002320 28 100.0 32 ............................ ACCCCAGGATGTTGCGCGATGTCCGCTAAAAC 2002380 28 100.0 32 ............................ AACAAATACAAAATTTTGATCCCGTCCTCCAA 2002440 28 100.0 32 ............................ GACCGACGAACCGGATTACGGCCACATCAGCG 2002500 28 100.0 32 ............................ TCGCTGATGATCAATCAGCCCAGCAACCGCCA 2002560 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGCTGGTTCGATTCGATGCCGGAAAATGGTTGTCTCGCCTGAGCGACTACGTGCATTGCACCAGCATTCGCCCGGTGCCGGCGACGCTTGCAGGTCACGCTATTTACCGCCGCCTGCAACCCAAAACCAACAAGGAGCGTCTGGCGCGGCGCTATGCCAAGCGGCATCCGTTGAGTTATGACGAGGCCCTGCAACACTATAGCGGCATTGCACCGGCCAGCATTCCCACACCGTTTATCCGATTGACAAGTTTGAGCAGCGGGGAACAATTTTGTTTGTGGATCGATAAGATTTTGGTCACGGAAGCATCGAAAGCCGATTTCAGCAGTTATGGCCTAAGTCCCAAGGCCACAATTCCAGAATTTTGACCAAAATTTTTACGCTCTTTAAAAATTCAATAAAAATCATACAGTTGCATTAAGCGATTTTCGGGATGGGTAAATTGGCTTAAATCTTCCATAAACCGCTATGTAACTGGCTTCCAAGTTTTTTAAAATCA # Right flank : AGTGAGTGTCGCAAGCTGGGCCGACTGGTCGCTGTCCGTTGCTGTGTCCGGTTCCTACGAATAAAATACTTCGGCTGATAATTAGGATCGGGAGGGCTACTGCCGGCACGCCGCCAGGTAACGTAAATATGGCCTTCACTGTCGCCGCCGGTCTTATCGATGGCAATCCAATTTTTGTCGCCGATGAATTGGTATGCCGGTTCGGACCATGTCACGCCTCTATTCCTCGGATTTAATGACCGAACCGCCATCAAGACTATAGCCGTAACCACCGTATTTGATAGCAGACGAAGTCGAACAATCGCCAGCCGACGACGATATTGGCCGGGTTGAGCGGATTGACGGCGATCGTCGGCTCGTTGCCCTTATCGCCGGCAATGTTTTGCTCGTTGGTATCGACGTTGACCTGATGACTGACATACGAACCAAACCTCGCGCCAGGAGAAGGCGCGGCCCGCACCCCGCTTGGCAGTATTATGGATGCCAATAAGACGCCATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //