Array 1 107821-106344 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNN01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE373 373_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107820 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107759 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107697 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107636 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107575 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107514 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107453 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107392 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107331 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107270 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107209 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107148 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107087 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107025 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106922 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106861 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106800 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106739 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106678 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106617 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106556 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106495 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106434 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106373 29 96.6 0 A............................ | A [106346] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125873-123953 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNN01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE373 373_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125872 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125811 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125750 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125689 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125628 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125567 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125506 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125445 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125384 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125323 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125262 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125201 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125140 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125079 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125018 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124957 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124896 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124835 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124774 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124713 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124652 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124591 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124530 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124468 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124407 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124346 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124285 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124224 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124163 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124102 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124041 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123980 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //