Array 1 758912-761185 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG705227.1 Bacteroides sp. 3_1_33FAA supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 758912 47 97.9 29 ...A........................................... TTCAAAAAGTTGCACCTTTGCATCGAACA 758988 47 100.0 30 ............................................... GAGGAGCCTGACCTGTTAAGTCCCAATCAA 759065 47 100.0 29 ............................................... TACAATTGGCGGTGTTAAGGTGTTGAATC 759141 47 100.0 30 ............................................... TCGCTGCTTCTACTGCCGCAACCCAGAACA 759218 47 100.0 29 ............................................... TTTTAAACAACTTACCTGTAAGAATCTCG 759294 47 100.0 30 ............................................... AGAGAGGGGCGAAGAATTTCCTTGCAAAGC 759371 47 100.0 30 ............................................... CATATCACATATTGTTATCTGATGATTCTA 759448 47 100.0 30 ............................................... AGAATTTAATTAAGGCTCATCCCGACAAGT 759525 47 100.0 30 ............................................... CATATTCAGAATAATACACCTCGCAATTAA 759602 47 100.0 30 ............................................... AAATCCCAGTCGAGTAACGGCACAGCATGA 759679 47 100.0 29 ............................................... GGAAATACCAGCACCAGCAGAGGAACCAA 759755 47 100.0 30 ............................................... AATCGCCGATGTCCTTCGAGAGTGTCATAA 759832 47 100.0 29 ............................................... TGAAAAGTCTATGGAGAACCCTATTCTCG 759908 47 100.0 30 ............................................... GGGAAGCTGCCCCACTGTTGCCGAATACCT 759985 47 100.0 30 ............................................... AACGGGGATGTATTTCTTTTCCGTACGATC 760062 47 100.0 30 ............................................... TGCCTCCTAGACCTTCAGATCTTGATCAAG 760139 47 100.0 30 ............................................... TAATGTCGCTGTCGTATCTATCAAGAACGC 760216 47 100.0 30 ............................................... CAGCACCAGTCTGAGCGGCAGATCCAGACA 760293 47 100.0 30 ............................................... CGGATATCGCCAATGAGATCATCACCTTTC 760370 47 100.0 30 ............................................... TTTCTGTACAACCTCGTAGAGTGTACCATC 760447 47 100.0 30 ............................................... AACTTCCTTCGACGGGAAAGACGCTCAAAC 760524 47 100.0 30 ............................................... ACTTCGGGGATAATTCTGCGTATTGCAGGG 760601 47 100.0 30 ............................................... TATTCCATTCCGTTAAGCTGGTAGATAGGT 760678 47 100.0 29 ............................................... ACGTGGTTATATGTCTACAATGTCAACCG 760754 47 100.0 30 ............................................... CATAACCAAAAACTTTATCTCCTGAAATAC 760831 47 100.0 30 ............................................... TAAATCGCAATAATAAGAAGCCACATGATT 760908 47 100.0 30 ............................................... CAGCAGATGTCATATATTCCGTCATTTGAG 760985 47 100.0 30 ............................................... CCGTAAGGTGTAGCGGATTGCGTCTTAGCA 761062 47 100.0 30 ............................................... TCAACAGTTACCGTCAAATCCCCTAATATA 761139 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 30 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CTGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 121907-122141 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG705231.1 Bacteroides sp. 3_1_33FAA supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 121907 32 100.0 37 ................................ TATTTATGTCCATCTCTACATTGTCAACTAATACGAG 121976 32 100.0 35 ................................ TCTTGGACAAGGAGAAAGACAAGCCCGACTCCAAA 122043 32 100.0 33 ................................ TTTGATTACTTGTTTTACTTCTGCTTCCATAAA 122108 32 84.4 0 ..........G.......A.A.......G.G. | AA [122125] ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.1 35 GTCACACCCTACGTGGGTGTGTGGATTGAAAC # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : CATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCATGATAAGGCCTTGTAACTGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGCCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //