Array 1 42200-44567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOH01000028.1 Pseudomonas aeruginosa strain AZPAE15013 AZPAE15013_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42200 28 100.0 32 ............................ TCCTCGGATGGCGCACGGTCTGTGCTGTCGAG 42260 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 42320 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 42380 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 42440 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 42500 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 42560 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 42620 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 42680 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 42740 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 42800 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 42860 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 42920 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 42980 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 43040 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 43100 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 43160 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 43220 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 43280 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 43340 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 43400 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 43460 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 43520 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 43580 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 43640 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 43700 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 43760 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 43820 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 43880 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 43940 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 44000 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 44060 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 44120 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 44180 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 44240 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 44300 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 44360 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 44420 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 44480 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 44540 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54320-53092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOH01000028.1 Pseudomonas aeruginosa strain AZPAE15013 AZPAE15013_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54319 28 100.0 32 ............................ TATCTGGAATGGTCTATCGCTCATCTCGCCTC 54259 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 54199 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 54139 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 54079 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 54019 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 53959 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 53899 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 53839 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 53779 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 53719 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 53659 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 53599 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 53539 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 53479 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 53419 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 53359 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 53299 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 53239 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 53179 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 53119 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //