Array 1 16344-17040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDJO010000009.1 Streptococcus macedonicus strain P4324KF2 KS_55_NODE_9_length_68545_cov_605.976_ID_656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16344 36 100.0 30 .................................... TTTTGATGCCAGTTTTCATTGATAGTTCAG 16410 36 100.0 30 .................................... TGTAAACGCAAGAAATGATATGATAGTTAA 16476 36 100.0 30 .................................... GGAAATACGATGAAGAGGAAACAGATGAAA 16542 36 100.0 31 .................................... TTGGTGGAAATGCAGTTGTTACTGACGTTAA 16609 36 100.0 30 .................................... TAAAAATCATGGTTAACTGTGAATTATTCA 16675 36 100.0 30 .................................... AAGAAATCGATAAGAAACCAGCGCAGAAGT 16741 36 100.0 30 .................................... ACATTTATGGTATAATTGGCGTGTAAAGAG 16807 36 100.0 30 .................................... CAACAGCAGCTCATTTCTCTATGTCAGAGA 16873 36 100.0 30 .................................... GTTAAAAGAAGCTACTACGGTTGTTAGAGT 16939 36 100.0 30 .................................... ACAAAACTACGCTGGAAAGCAATATATTAC 17005 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTCGAAAGCTCATTGGCTGCTTATTTAGATGAGGGGGTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTAAAGATGGTTTTATTACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAACTATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTAGCTGATAGGGAACATGTTAATTATTCAGAAGTTTTGACGCAAGCTTTAGAGAAAAAATTACAGCTTTAAATCGCTATAAACGTTGTAAAATCAAGTTTTTTGAGGTATAATATAGTTTAAAATGATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CTGGTATTTAGGATTTAGCAGGAATAGAATGTCATGAAACTTACTAAAGTTTTAGTGAAAACACCTTTTAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGAGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCGTCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAGGTGGCGCAATATTTAACATCGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 17680-18640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDJO010000009.1 Streptococcus macedonicus strain P4324KF2 KS_55_NODE_9_length_68545_cov_605.976_ID_656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17680 36 100.0 31 .................................... ATTGTATTTGCTTACATTAACCCATCACAAT 17747 36 100.0 30 .................................... AGCTTAACACAACGCAAGCTGCTAAAGGCT 17813 36 100.0 30 .................................... CGCTTTTTTGATGAAATTTATCAGTATAAA 17879 36 100.0 30 .................................... TTGAGCCATCATATTCTGTTCGAAATTGTA 17945 36 100.0 30 .................................... AACTACTAAGAAGCGTAGTTCACCAGATTG 18011 36 100.0 30 .................................... ACTACTTTTAAAATATGAAAATCAAGCTGA 18077 36 100.0 30 .................................... ATATATAAGTTTCCGAAAGTAGACGAACCA 18143 36 100.0 30 .................................... AATCATCAGTTTCTTTTGGTAGAACCCAGA 18209 36 100.0 30 .................................... ACATACAAACGTATTGTCATTAACATTTAC 18275 36 100.0 30 .................................... CCCCTTGGGAATTGGAGTTACCACTTGCGT 18341 36 100.0 30 .................................... TTTCAACTTTTTGGCCAAGTTGAACTACTT 18407 36 100.0 30 .................................... AGAAATGTTCACTGTTAGAAGTGCAGATGT 18473 36 100.0 30 .................................... ACGCAAAAGTTGGCGACCATATCACGCCAG 18539 36 100.0 30 .................................... ACTATAATCAAGCTTAAGGAAACGAGGGCA 18605 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGAGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCGTCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAGGTGGCGCAATATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CAAATTGCGCATGACATTTTCCGAAAAAGAAGTTTTAGAGCTGTGTTGTTTATTTTAGCATCTTATGATGTTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAACAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATTATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAGGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //