Array 1 1484784-1485885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028295.1 Acidovorax avenae subsp. avenae strain MD5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1484784 32 100.0 35 ................................ ATGACTTGGCGCTGCTGGCCGCCCGCGTGCATCAT 1484851 32 100.0 34 ................................ GCCATCGTTTCCGCGTCGTTCGCGCCCTTCTCCA 1484917 32 100.0 33 ................................ ACCTACCTACGGATACCACAGTTTTCAGCTCGA 1484982 32 100.0 35 ................................ TTCGTCCATCCGCCAGGGTGCGCTGGACGAGCGGG 1485049 32 100.0 36 ................................ CAGAACGAAATCGAGGGTGGCCGGCGCGGTGATGGC 1485117 32 100.0 34 ................................ ATGCGCTTCTCGGCAAGCACCGCGTTTGCGGGCT 1485183 32 100.0 34 ................................ GATCTGGGCATGCCGCATACCCTCAATGCATCGA 1485249 32 100.0 34 ................................ ATCAGAAAGCCTCAGTGGTTCCACGCACTGGGGC 1485315 32 100.0 36 ................................ AGCTTCACCGCGCCCAGGTGGCGGGACTGCGGGAGT 1485383 32 100.0 36 ................................ ACTGGCGGCACCAACTACGCCACCCCGGCGGACTAC 1485451 32 100.0 36 ................................ GGCGTCCTGCTCAGGGCCGCCTTCCACCGCGCCGGG 1485519 32 100.0 36 ................................ TCCAGCTCCTTGGCGTACTTGAGCTCCACCTGGCGC 1485587 32 100.0 34 ................................ GTCCGCCTGGGTTACCTGGACCCGCGCCAGATCG 1485653 32 90.6 35 .........C.C.T.................. TGCAGCGTGGTTGTGATGCTCATGTCGCCGCAGAT 1485720 32 96.9 36 ............................G... ATAGGTGGGGATCATGAACTGGTGATGCTCTCGGGT 1485788 32 90.6 35 .........C..........TC.......... ATGGCAAGCGGCAAGACCACGCCGCCCCAGCACCT 1485855 31 78.1 0 .C...A...-..A....T......A.C..... | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 97.4 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : CCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGGTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGTCCTTCCGCTCCCTCCCTTTTCTTTTTTCTTGGTGCCGGGCGTTGCGAACCCCGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGTGCAAGTGGTTGAGGGCAAAGGGAATTTTTCCTGGGTGGGGGGCGGGGAGCGCGAGCAGCGGGTGGATTGGGGCGGGTTCGCGGATGTGTGGGGGAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGCC # Right flank : CAATAACTGTACGGCTCGCATCACGCGCGAGCTTTCGGCAGCATCCTGGATGGGCGCGCGGATGGAAACAACGAGAGGCGTAGCGGCAAGATGTTCGTCGTCGATCCACGCCCCGTGCAAACATGGAATGGGTGGGTTGCAATGTCCGCCGGGTGCACCCCATCCATATCCAGCGGCATCGCTGCGCTTGCTCTGGGGCTCTTACATCGGAGACCGATTGACCCCCATCCGCATCGCCACCCGCCGCTCCATCGGCAACCCATGGGCAGCCTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGACCGGGCGGAACCCCAGCCTCGCGTAGGCTGGCGCGCTCCATGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGCCTCGTGCCGATGCCCATGCGCTGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4457803-4456827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028295.1 Acidovorax avenae subsp. avenae strain MD5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4457802 32 78.1 35 A.TC.ATAG....................... ATCGGCCTCGTGGGAGCAGCACGATGAAGCGCCGG 4457735 32 100.0 36 ................................ GACGCCGTGTACCTCATGGCCCTGAACCCGAAGGCC 4457667 32 100.0 34 ................................ CCGGTCACGGCGATCGGGTCCACCTCCCAAACGC 4457601 32 100.0 37 ................................ GCCAGCAACCGGATCGTCGGCGGCGGACTGCGGGGCA 4457532 32 100.0 35 ................................ ACGAAGGCGCGCCGGGCCGGGTCGCTGACCTACGT 4457465 32 100.0 33 ................................ ACTCCCACCAGAAGATCGTGGCTTGTCCGGCCG 4457400 32 100.0 35 ................................ AAGTTCCGCGCATCCAGCCTGGGCTGGATCATGAC 4457333 32 100.0 36 ................................ TGCAGCCACACCCGCGCCGGCCGAAGACAGCCGGCC 4457265 32 100.0 37 ................................ AAGGGCATCGCATCCACACCGAGCACCGACCGGATGG 4457196 32 100.0 35 ................................ ATCCCGTCGTTGAGCTTGAGAACGGCCGCCAGCGG 4457129 32 100.0 36 ................................ TGCCACTACGGCCGTCGGCGCATGCCGCGCGCGAGC 4457061 32 100.0 37 ................................ TATGACGGCGACGGGCGGCCCGTCGAAGCCCCGGCCA 4456992 32 100.0 35 ................................ TGCGAGACCTGCGCCTGCATCCGCATGGCGGTGTG 4456925 32 100.0 35 ................................ TTCATGCACTCCAACTGGTGGGCTGTATCCCGATA 4456858 32 93.8 0 ....................C...A....... | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 98.1 36 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCAGACCATGCCGCTCAAGCTGCTCAAGCCCTGCGTCGCCACCATCGACGAACTGGCGCGCAACTACCGCACCAGCGTCGTGCTCTGCACCGCGACGCAGCCCGTGCTGGAGGCGCCCGCGTTCGACGGCGGGCTGACGGGCGTGCGCGAACTGGCGCCCGAGCCCACGCGGCTGTTCCAGCAACTGGAGCGGGTGCGCGTGCGCCACGTGGGCACGCTGGACGACGCGGCCCTGGCCGGCCACATGCGGGCGCGCGAACAGGTGCTGTGCATCGTCAACAACCGCCGCCACGCGCGGGCCGTGTACGAGGCCATGGCCGACCTGCCCGGCGCGCGGCACCTGACCACGCTGATGTGCGCCAGGCACCGCAGCGAGGTGCTGAACGAAGTGCGGCAGATGCTGAAGGACGGGGAGCCCTGCCGCGTCGTCAGCACCAGCCTGATCGAGGCCGGCGTCGATGTGGACTTCCCCACGGTACTGCGCGCCGAGGCGGGCCTGG # Right flank : TCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACTCCCCGCCTATCGCCCCAGTCCGACATCCCCCCACCCCTCCTCCCCGGACACTGCCTCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGACTCCGCCACCCCCCTCACCGCCGAACGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGGCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //