Array 1 4975-5331 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUPG01000287.1 Bacillus thuringiensis strain AFS030866 AFS030866_109_E12_Contig287_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4975 30 100.0 35 .............................. GGGACACTTTTCCATAATTCCAATATTCCATGAAA 5040 30 100.0 35 .............................. AATGAGGTCAAACGGTGTCATTCACGGACATTTTC 5105 30 100.0 36 .............................. TCATGAGTTCGATAAACTTTTTAGCTCCGTCTCGGA 5171 30 86.7 36 .G.G..T.....................G. ATGTATAAAATCTTTGCTCCAAAGAATGTTGACCAT 5237 30 96.7 35 ..........G................... TTTAGCATGGACGGACTATATTTGTTTTTTAATGT 5302 29 83.3 0 ....-....C.TA...T............. | T [5313] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.4 36 GTTTAACACTAACATAAGATGTATTTAAAT # Left flank : AGTCAACGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTATGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCCACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAACATTGATGCGTGGGCATTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACAATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATTTGTTAAAGTATCTATCTGTATTTCATCGGG # Right flank : GTTACGGTTACTAATTGTTCAGCACTCAAACGATAAGAAAGTGAATTTTATCAATACGAATTTTTTCTTTTACATATTAAAATGGAAGGCCCATTTCAATGTATACTGAACCCTTCACAAATCGTGAAGGGATTTTTTTATTCAATAAACGAGTTTTACAAAAGATACAAAATGTTAAACT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10229-9062 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUPG01000086.1 Bacillus thuringiensis strain AFS030866 AFS030866_109_E12_Contig86_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 10228 32 100.0 33 ................................ ACTTCTAAAAACCTGTGTCAATCGAACTGTATT 10163 32 100.0 35 ................................ AATGAAGTAAACGTTATAAACGGAAATAACAATAA 10096 32 100.0 35 ................................ AGGTGTATGTGCAGCAGTATTTGGTACAACTTTTT 10029 32 100.0 34 ................................ ATTGTATTTGGAGCGGTTAGTTGCTCGAATGGCA 9963 32 100.0 34 ................................ TCAACAATTGTCTGATAACTGCACGACTGAATTT 9897 32 100.0 34 ................................ TTACAAAACGAATCTATCATTTGCTACAAGAAAA 9831 32 100.0 34 ................................ CAAACAGAAGCATAACAACAAATAAAAAACTAAA 9765 32 93.8 35 T..................A............ TGATTATAGCAAAAAAAGGGGACAGAATATAAGAA 9698 32 81.2 34 .C..T......AG......T.....A...... ATTGCTCATTCATCAAAAGTTTTCAAAATTACTT 9632 31 87.5 32 T...-................A.A........ CCATAGTGATCATAGTTGTGGGTTGTGAATTT 9569 32 87.5 35 ..A.........T.T......A.......... TCTTTGCAGGTTTGGGAAAAAGGAGAAGTATTAAT G,A,G [9550,9561,9565] 9499 32 81.2 34 .........T.CGA.....T......C..... ATATAAATATTTCATCCATACCGGATTATCTTCA 9433 32 71.9 176 A.TA..T.C.....T.....AA.....A.... CTTAGTAGGTGAGAACGTATAGCACACATGAAATGTCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAAATTTATGATTTTCTATACAAATTTTTTTATCAAATAAAGAAATTGTATATTTTTGAACAGAATTAACGTAATTTTGTATGATTTTGAACAAAAATCGGT 9225 32 87.5 33 ......T..T.C..G................. CACTTATCTTTTTAAATTCTCCTTATAATATTT 9160 32 93.8 35 ................T......A........ CGCTAGTGCTAAACGTCTAAAGGAATTGTATGGGC 9093 32 81.2 0 ...A.......AG......TT..........G | ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 16 32 91.6 44 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGCATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAACGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : TGGTAAGACACTTGATAGTATTTTATTAAGCCTTAACGCATTACCCAAATACCTTTTGACTAACGTCCTTCACAATCTTGAGGAAGAAGGATTCTTTTGGTAATGCGTTAACTTTAATTAAAACTTCTTGAAATATATAACGATATTATATAATATATAGGTATATTGTTAGTTTAATTGATTCCGTTTATTCCCACACCTTTTTGTGTTGTGGTTGAGTTGTAGAAGCAAGTTGCGTCTTGTTTCAATTGTGAAAGGGCTTCTTTGAGCCGATTAGTGTATATAGCTTATTTTGCTATGCACATTATTAATCGACTTGAAGAAGCCCTTTTTGTGTTGTTTTCAAGTTTGTAGGCAGGGTTATTTATGATTCATAACATAACAAAGTAGATAGTAGAGGAGATAGTAAAATGAAAAAAGATTGTAGACACTTAAGACTAGTACCAACAGTAGAGGAACATAAAACACGAATGGAAAAAAATCAGAAGCCAAATGCTGCA # Questionable array : NO Score: 7.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.58, 5:0, 6:0.25, 7:-0.90, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19166-18672 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUPG01000086.1 Bacillus thuringiensis strain AFS030866 AFS030866_109_E12_Contig86_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19165 32 100.0 33 ................................ ATAACTTCAGCAACTCCTTACCAAAGCTTACAA 19100 32 100.0 35 ................................ TTTCCTTAATTGTTTTACCCTATCCCCACGCATAA 19033 32 100.0 33 ................................ TATATAGAACTATTCCGATGTCTATCAAAGATC 18968 32 100.0 34 ................................ TTCATAGAACTTGAACTCTCAAAAAACTGGAGAA 18902 32 100.0 34 ................................ ATAACTAGGAAGTAATATAAAGCAACCCCAACAC 18836 32 100.0 34 ................................ TTTTAAAGCCAGCCTTCCAACCCCAAAAGTTAGG 18770 32 100.0 35 ................................ AAACTGTTGAGGAGCATTTATTAGGGGTAAAAGAA 18703 32 87.5 0 ...A......A..A.....T............ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.4 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : GGAAGCTGAGTAGTTACGAATAAACTTGATAAGTGGATTGAAAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAAAGGCTATTGTGGAACTATACACTTTTGTTTATCAGTTAGGTAATAGCTATAAAAATAAGGTCGCACATATTGATGTAAAAGAATAAATTGATTAAGAAAATCCTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTAACGTATTTGTGTGTAATTTTGAACGCAAATCGG # Right flank : AGCACCCTTACTCAATTGAGTCCAAAAAGCACTGTCGCACTTCTAGTAAGTGCGACTAACATCACAAGATTGAGGAAGAAGGTTTTTTTAAGTAATGCTTTAGCTTCAAAATAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTATTATATCAATTATTCCATACAGAAAATATCATTCCTTATA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //