Array 1 70507-71854 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFV01000005.1 Pseudomonas aeruginosa strain KOL14.W.495.34 Scaffold_5_length_697261_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70507 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGTGGCGT 70567 28 100.0 32 ............................ GCCCGGTCAACTGGCAGCCACTTGTTCGGGCG 70627 28 100.0 32 ............................ GATCAGGGTCATGAGAGACACCGCTAAAGTAA 70687 28 100.0 32 ............................ GACGAATCCGGGCGATGGTGGCGGCGATGGTG 70747 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 70807 28 100.0 32 ............................ TTTGAGGGTATGACCATGAAGCGAATCGACGA 70867 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 70927 28 100.0 32 ............................ TTCCTCGAACACGCCATCAGCAGCCTGGAGGT 70987 28 100.0 32 ............................ ATCGCCGGCGCCGAGCGCGAGACCGTCTACGG 71047 28 100.0 32 ............................ ATCAGCGGATCGGCGCCCATACGCTGCGCCAT 71107 28 100.0 32 ............................ TCGCTGACGATGACCGGCGGCGCCTCCGGCTC 71167 28 100.0 32 ............................ GCTGATCGCCAAGCGCGACAAGTCGACCGGCC 71227 28 100.0 32 ............................ TCGGGGTGGCGGGCCAGGTTCAACGCCAAAGC 71287 28 100.0 32 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTC 71347 28 100.0 32 ............................ TGGTCACTTGGCGGCCTGCTGGCGCTTCAAGT 71407 28 100.0 32 ............................ ATGAACAGCGACACGGCGGCAAGGTAGTGGGC 71467 28 100.0 32 ............................ ATATCGTGCCTGTCTTGCAGTCCTATCACCCC 71527 28 100.0 32 ............................ TCGAACATCGGCGAGAGAACGTCTGGCTCACA 71587 28 100.0 32 ............................ TGCAGGCCGCCGTCGAGCAATCCGCCGAGACG 71647 28 100.0 32 ............................ TGTCGTTGTTATCGCTGTCCTGCCATTCGTCC 71707 28 100.0 32 ............................ TGGACATCCTCACCGACCTGATCGCGCAGCAG 71767 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 71827 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAAGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81792-80383 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFV01000005.1 Pseudomonas aeruginosa strain KOL14.W.495.34 Scaffold_5_length_697261_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81791 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 81731 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 81671 28 100.0 32 ............................ ACCAGTTCCACCGCCATCACCACCAGGGTCTT 81611 28 100.0 32 ............................ CTTCAACCTCGCGGCATCCGCAACAACAACCC 81551 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 81491 28 100.0 32 ............................ AGTACTTCGCAGCGAGTAATTGCAGAACCCCT 81431 28 100.0 32 ............................ TGGTGCTGATGGAGCATCACGACCGGCCGAGC 81371 28 100.0 32 ............................ ATCCAGTAAGCCCGCTCGCCCTGGCGCTGGGT 81311 28 100.0 32 ............................ ACTCCTCAGGCGTATCGAACTCGACCCACTTC 81251 28 100.0 32 ............................ CTCACCTGCTGGCGAAGCTGGATCGACCGGTA 81191 28 100.0 32 ............................ GGCACGACGTGCGTCAAGACGCCGACTGACCC 81131 28 100.0 32 ............................ GGCATAAGTCGGTGGCATCCGCGTGTCGTCGA 81071 28 100.0 32 ............................ GCATGCAGGTGCGAAGAAACACCGATTTCACT 81011 28 100.0 32 ............................ ATGTGGTCGGCGTAGCTCCAGGGGCGATGGGC 80951 28 100.0 32 ............................ TGCATCTTCACGGTGACGGTTCGACCGTCCTC 80891 28 100.0 33 ............................ ATGGCGGCTCCTGTCGATGATAAGCGCCTGCAT 80830 28 100.0 32 ............................ TTGGCAAAGCTGCTGCTGAACTATCGAAAGGT 80770 28 100.0 32 ............................ AGTTAGAGCCGGCAGTCGGCCTGCTGTTCGTT 80710 28 100.0 32 ............................ AACCGGTCGCAAATGACTGCAAGGGCTGCTTC 80650 28 100.0 32 ............................ TGCGCCAGGTGCTCCACCAACGCGAGGGGGCT 80590 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 80530 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 80470 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 80410 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGTTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTTCTACCCAACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //