Array 1 71228-71396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBT010000016.1 Streptococcus uberis strain GCPRG104 Contig_16_218.175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 71228 36 75.0 30 AC.ACGGT....................CC...... AGCTATTACTCCAAAAAAAGTAACAGCTCA 71294 36 86.1 31 ......G..............T......CTC..... TTAGGGCGTGAAATCTTCCACATCCAAGTTA 71361 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 87.0 31 GTTTTAAAGCTATGTTATTTTGAATGATTAAAAAAC # Left flank : TCTTCATTCATGATTTTCCTCCTCATTTAGTCAATATTTTCTTGTTTCTGCCTATTATAGACTAGATAGGTTTCAGAGCTATGTCATTTTGAATGATCCCGAAACAAGTGTGAAAAGTTCCACATTTGTAAACAAGTTTCAGAGCTATGTTATTTTGAATGATCCAAAAACTATTGATTTTCAAGCGTAGTCGGAACTACGGTTGTAAACAATGTTTCAGAGCTATGCTATTTTGAATAATCCCAAAATGACTTTAGCCCATTTTTTCGGATTGTTGGTAAGACTTCTGATGTTACCCAGCGTTTGAACTCTTTCGCTTGTGGAAGTTTGCTAGATAAGATAAGTGAGTAGAGACCAGATTCATTAATGATAGTTTGATTTCTGTTTTGACCTGCCGTCGCGATTTGCGACGTTAGCTTATCATCACTATCGACATGTTTACTTAGAGCATCTCGTGAATTTGAATATCCCAAAACTATTAATTTAGCTGTGTAGTTGTA # Right flank : CCAATAACAGGTGTACTTTTAAGTACACTTGTTATTTAAAATCATAGTGCTAATATGTATTATTTTGTTACCCATTTTGTTTCAATAATCAATTTTAAATAATTTAAAGTTGTTTATTTTTCAGTTCCCTAATTGAATATCTTTTATCTTTAATCGAAAATACTTTAAATGAGTTACCCTCTAACCCCTTTAATATTCTGCTTGAATTTCTAGAATTATAAACTGTTTTTAACTCGTTACTGTTCAAATTTGTATTTATGATTGTATTTTCTCTATTGTTCAAAATATCAAAAAGTAAATCCTGTTCCCAATCACTTTTTGGAGCAACAACTGCATTCTTTGCACCAAGATCATCTAAAATCAAATAATCAACATTTTTCATCATTTCAACTGCTTGTTGTTCAGTTAATTTTGCACCTTTACCAAAATTCCATCCCTCTTTGATTTGTTTAATAATTTCAGTAAAACTAATAAATAACACGCTTTTGGGAGTCCCTTTT # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAAGCTATGTTATTTTGAATGATTAAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 319088-321164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBT010000007.1 Streptococcus uberis strain GCPRG104 Contig_7_215.895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319088 36 100.0 29 .................................... AAGCTCAATTCTAAACGGTCTTAGAAAGC 319153 36 100.0 30 .................................... ACAACAGTTATCTTGCACAAGCTACAAACT 319219 36 100.0 30 .................................... TTTGTATTATTTTCAAATGCGTTATGTTTC 319285 36 100.0 30 .................................... CTGTGTCCAAGTGTATTTGCTTGTATCTGT 319351 36 100.0 29 .................................... CAATTACGCAAGTAAGGACGATAGCAAGT 319416 36 100.0 30 .................................... TTATGGATTCCTCAAGTTACTAATCCTAAG 319482 36 100.0 30 .................................... GTGACCTTGCCTTGTCTCGCTGACATCCAT 319548 36 100.0 30 .................................... GCTTGAGTTGCGGTTGCTGAGCCATAATTA 319614 36 100.0 30 .................................... TCACTACTGGTTTTGGTTGGTCGAGTTGGT 319680 36 100.0 30 .................................... ACAAAACCGAAACTGCTGTCCAAACACTAA 319746 36 100.0 30 .................................... AGTAACCCTAAAAACTTTGATTATCGAATT 319812 36 100.0 30 .................................... ACGCAGACAAAAAAGAGCCGTACAAACCTG 319878 36 100.0 30 .................................... TTGACTTGGTATCCAAAACCCTAAACTTAT 319944 36 100.0 30 .................................... AAATCCACTATACAACGTGATTAGACCAAT 320010 36 100.0 30 .................................... AAATCCCTTCTTTCTTGTAAATTAATCTAA 320076 36 100.0 30 .................................... TTAATTGCCCTTTTTTAGCAGACAACGCAT 320142 36 100.0 29 .................................... TAAAGAGGTGGAAGAATGAAATTACACTA 320207 36 100.0 30 .................................... TTAGCATATAAACCGTCACTACCTTCTAAA 320273 36 100.0 30 .................................... TCTTTTTCGTACTCATCAGGCATAAGCAAT 320339 36 100.0 30 .................................... TGGTATGTTTGAATATAGAGATGATGCTAT 320405 36 100.0 30 .................................... CTCTGCAACAGTTTATATTAAACATGCATT 320471 36 100.0 30 .................................... AGAAATCCACCGATCACGGTTAAAGCAGTA 320537 36 100.0 30 .................................... ATTATATTATATAGTAAATAGGTATTTACG 320603 36 100.0 30 .................................... CTCTGCAACAGTTTATATTAAACACGCATT 320669 36 100.0 30 .................................... ATATACTTTTCCAGTATTATCAGCCTTGCA 320735 36 100.0 30 .................................... AATGCCTTGACTTTATATACAATATTGTAT 320801 36 100.0 30 .................................... ATGTTCATATAGACACCTCGCTAGCTAGCT 320867 36 100.0 30 .................................... TCAAACTTAGCTGAGATGTTAAATTGTGGC 320933 36 100.0 30 .................................... AAATCCCTTCTTTCTTGTAAATCAGTTTAA 320999 36 100.0 29 .................................... TAGAGAAGCTTTGAATGCTTGATAATACT 321064 36 100.0 30 .................................... TTTTGACCATTTCCTTGCAGTTAGCAGCAT 321130 35 91.7 0 ..................-...............TT | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAAAATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : TAGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTTCTTACTTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAACAGCCTTAAAAATGTATATCGAGAAATGCGTTTTCAGAGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGTAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATCGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //