Array 1 58155-54118 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQA01000220.1 Serratia marcescens strain 1509 NODE_272_length_100905_cov_20.750727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58154 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 58094 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 58034 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 57974 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 57914 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 57854 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 57794 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 57734 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 57674 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 57614 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 57554 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 57494 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 57434 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 57374 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 57314 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 57254 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 57194 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 57134 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 57074 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 57014 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 56954 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 56894 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 56834 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 56774 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 56713 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 56653 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 56593 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 56533 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 56473 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 56413 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 56352 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 56292 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 56232 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [56186] 56185 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [56176] 56124 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 56064 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 56004 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 55944 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 55884 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 55824 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 55764 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 55704 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 55644 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 55584 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 55524 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 55464 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 55404 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 55344 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 55284 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 55224 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 55164 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 55104 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 55044 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 54984 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 54924 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 54864 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 54804 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 54744 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 54684 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 54624 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 54564 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 54504 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 54444 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 54384 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 54324 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 54264 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 54204 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 54144 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 69378-67004 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQA01000220.1 Serratia marcescens strain 1509 NODE_272_length_100905_cov_20.750727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69377 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 69317 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 69257 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 69197 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 69137 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 69077 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 69017 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 68957 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 68897 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 68837 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 68777 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 68716 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 68656 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 68596 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 68536 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 68476 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 68416 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 68356 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 68296 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 68236 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 68176 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 68115 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 68055 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 67995 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 67935 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 67875 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 67815 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 67755 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 67695 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 67635 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 67575 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 67515 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 67454 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 67394 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 67334 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 67274 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 67214 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 67154 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 67094 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 67034 28 96.4 0 ....................A....... | G,A,A [67007,67011,67013] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //