Array 1 140157-138416 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGV01000004.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N45931 N45931_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140156 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 140095 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 140034 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 139973 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 139912 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 139851 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 139790 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 139729 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 139668 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 139607 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 139546 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 139484 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 139423 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 139362 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 139300 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 139239 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 139178 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 139117 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 139056 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 138995 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 138934 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 138873 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 138812 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 138751 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 138690 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 138629 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 138568 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 138506 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 138445 29 96.6 0 A............................ | A [138418] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 149898-148891 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGV01000004.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N45931 N45931_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 149897 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 149836 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 149775 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 149714 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 149652 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 149590 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 149529 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 149468 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 149407 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 149346 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 149285 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 149224 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 149162 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 149101 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 149040 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 148979 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 148918 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //