Array 1 291-978 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHA01000123.1 Pseudomonas aeruginosa isolate 80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 291 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 351 28 100.0 32 ............................ TGGCGAGCCCTGGAGCCGTTTCACTCTGTGAA 411 28 100.0 32 ............................ TTCGGGTTGTGCGGGAGCTGGCCCTGCCAGTT 471 28 100.0 32 ............................ TTATGCGCCAGTGCCGGTGGAGCCATAGGCCA 531 28 100.0 32 ............................ TTCAGCAGCGACCCGGTCAGCAGCACGGTGCG 591 28 100.0 32 ............................ CTCCTTGCCGGGCGCGGCGGCGAGCAGTTTGC 651 28 100.0 32 ............................ AACAAAAACGCCGGCTCGAGGGCCGGCGTTCG 711 28 100.0 32 ............................ AGAACGACGTAGATGATGCGGCGGGTGAACTC 771 28 100.0 32 ............................ ACAAGAAACACACGCTTGCGGCGCTGGGCGAC 831 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 891 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 951 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10140-9506 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHA01000123.1 Pseudomonas aeruginosa isolate 80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 10139 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 10079 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 10019 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 9959 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 9899 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 9839 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 9779 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 9719 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 9659 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 9599 28 89.3 36 ...................TA.G..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA C,C [9573,9576] 9533 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 485-2372 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHA01000028.1 Pseudomonas aeruginosa isolate 80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 485 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 545 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 605 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 665 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 725 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 785 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 845 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 905 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 965 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 1025 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 1085 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 1145 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 1205 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 1265 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1325 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 1385 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 1445 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 1505 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 1565 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 1625 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 1685 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 1745 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 1805 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 1865 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 1925 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 1985 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 2045 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 2105 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 2165 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 2225 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 2285 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 2345 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //