Array 1 95135-94567 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_019958.1 Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     95134	    28	  96.4	    33	..G.........................	CAATCCGGCGGCGTCTCATGGTGGCGCGCCGTC 	
     95073	    28	 100.0	    33	............................	CGGGGAGGAATACCCGCGCAGCCTGACGGTCTC 	
     95012	    28	 100.0	    33	............................	CGGGATGTGGGACAGCCCGTCGGCAGTGGCTAC 	
     94951	    28	  92.9	    33	...........A..C.............	CAAGTGGATCTGGCCGCGCGTTCCCGGCATAGT 	
     94890	    28	  85.7	    33	...C........TG..A...........	CCTGATCGCGTCGCTGAGTGGATCGGCGGCACA 	
     94829	    28	  92.9	    33	............TA..............	CGATCGCGCGCGACTGTGATGGGTAAGGCGTTC 	
     94768	    28	 100.0	    34	............................	CGAGTTACCAGCTCGGTTCGGAGGCGGTGCGTTT	
     94706	    28	  96.4	    33	........................G...	CCTGATCGCGTTGCTGAGCGGACCGGCGGCACT 	
     94645	    28	  82.1	    22	A..C...........A..........TT	CTGGCGGACTGACAACGAGGAC            	Deletion [94596]
     94595	    28	  78.6	     0	.A..C.A..........A...T.....G	|                                 	T [94570]
==========	======	======	======	============================	==================================	==================
        10	    28	  92.5	    32	GTCTTCCCCGCGCCTGCGGGGATGAGCC	                                  	       

# Left flank :   CTCGTGGAACAAGCAGGCTGGCAAACGGGTGACAGTTGGCGCACCAGGGACTACCGGAACCTCCTCAATCGTCTTGCGGTAGGGCAGGTATGGGCGTTCCGGCTCACCGCAAACCCCACCTTCAACGGATATAAGACGGGGGCGAATTGGGCTGACACCAAGCCCCTTGCACACGTTACCGCCAAGCAACAAGAACACTGGTTGCTGAGCAGAGCAGAGCGGGCCGGATTTCGAGTGCCAGATCAATCGCACGACGTGACATCGATTCGCGTCACCAATCGCTCGACGCTCAGATTCACGAAAGGAGGTCACCGGGTCGTAATCGGCACGGCGACCTTCGATGGTGTCCTCGAAGTCCGCGACATCGACGCCCTGTCCCACACACTCACCGACGGAATCGGCCGAGCCAAAGCATACGGCTGCGGACTGCTCACACTGGCCCCGTTGACAGTCGTCAATGAAGCCAAATCGACAAATACCTGGTTCCGTGGTGAACAAGT
# Right flank :  GAAGTGAAAAGAACCCCGTCGTGTCTGGCCGGCGCTCCGGGTCACCACCATGATGTGGTCGTCGGCCACGCCTCAGCGGAGCGCTTGCTTAAGACGCAGGAGCGGCGTCTGGGTCCTGGAGCTTTTGTGGTCCATGCTAAGTACTCGGAATGTGTTCCGAATACCATCTTGTGGAGGGGTGTATTGCCCTCGGCAGATTGGCAGCAATAGGTGAGGTGCGTCCATGGCGTTGATCATCGATGATCCCGAGGTCGAGCGGTTGGCCACGGAGGTGGCCGCCAAAATGGGTATTACCGAGATTGCTGCGATTTGCGAGGCCCTCCGCAGTGCGCGACGGGCCTTCGGGATTGTCCAGCGACCCGATCGGGCCGAGGATCTTCTGGAAGTGATGCGGACCGAGATCCGGCCGCTGATCACTGACCGTCGCCCGGTGTTGAGATCCGAACGCGAACAGACCCTCGGCTACGACCCTGCGACGGGCGTGTGAGTCGATCATGCGC

# Questionable array : NO	 Score: 5.31
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCGCGCCTGCGGGGATGAGCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [14-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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