Array 1 15917-17145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJO010000006.1 Pasteurella multocida strain 92_67_2 Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15917 28 100.0 32 ............................ ACGACCACAATTGCGCTAATCAGTGCAATCAC 15977 28 100.0 32 ............................ TGCTGGCTCTTGTCCTACTTTTACTGTTCCTA 16037 28 100.0 32 ............................ TTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 16097 28 100.0 32 ............................ AAAAGCAGTGCGCGATTCTTACTATCGTAACG 16157 28 100.0 32 ............................ GTGAGTTCATAAAGGTGTGAATTAAGGGATTT 16217 28 100.0 32 ............................ AATATGTTTAAAAGCGATAGTTTGGCGAGTGA 16277 28 100.0 32 ............................ TTAGACAAAAAGCTGTTGCATTTGAAGCCAAA 16337 28 100.0 32 ............................ ATATATCTGCGTGGGTAAATGTTCCAATAATT 16397 28 100.0 32 ............................ ATTTGAAGATTTTTTGACTTTTTCACCGTCTT 16457 28 100.0 32 ............................ AGAAATACGCCACGTTTTTGATAAAATTTGAG 16517 28 100.0 32 ............................ AAAAGTGATTTGCACGCAGGATTTAGAAGTTG 16577 28 100.0 32 ............................ AAATTATGAAAAATCAATATTTAGCACTAGCT 16637 28 100.0 32 ............................ ATTTTCTACTTAGCTCCCTGTCGTATTCGTCT 16697 28 100.0 32 ............................ AAGGGGCGCACCCCTTGACCCCTTTAAACCGA 16757 28 100.0 32 ............................ ACGAACGACGACATAAGCGCATAGTAAACCCC 16817 28 100.0 32 ............................ AACTTTTGTGCAACTTCAGGCTTTAACTTAAT 16877 28 96.4 33 ....G....................... AAGTTGATAATTCATCCAATGTCATTTGTTCAA 16938 28 100.0 32 ............................ GAAGGTCAATAATCTAAAAGGGTCTATTCAAG 16998 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 17058 28 100.0 32 ............................ AGATTTGTCTATGAGTTCGACTTCGATAATGA 17118 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACTGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGACGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110415-113563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJO010000083.1 Pasteurella multocida strain 92_67_2 Contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110415 28 100.0 32 ............................ ATCAAAATCACCGACCTTTTCAATATCCATGC 110475 28 100.0 32 ............................ AATTTTTCTTAATCTTGCTCTATGTAATTTAA 110535 28 100.0 32 ............................ ACGAACAACAGGTGTAGTTAGTAAAGCTGAAT 110595 28 100.0 32 ............................ TTTAACGATTCCATATTTTTTATTAATTTTAA 110655 28 100.0 32 ............................ ATATTAATGAAATCACTAGTCGTAGTATCATT 110715 28 100.0 32 ............................ TGTACTCCAAGTCCATTTATTATCTTTAATGT 110775 28 100.0 32 ............................ AGTTTCGCGATTAGTAAAAGTACTAACTTTTT 110835 28 100.0 32 ............................ TTGTACCTGCTTATCGAGGCGTGACTTCATTA 110895 28 100.0 32 ............................ ACTTGTGCTCACAATGACCGTAAATTTCAGCA 110955 28 100.0 32 ............................ ACATGGGTGCTTTTTGTTTTTGGTAATTATCT 111015 28 100.0 32 ............................ CGAATCACTGTGCCGAAATTGCACAAAGCGGA 111075 28 100.0 32 ............................ AAAATGAGAAAACCATTCGTTTTCTGCGAGAA 111135 28 100.0 32 ............................ TGTCGGCGATACTGCAATTGCGAGTTGTGAAA 111195 28 100.0 32 ............................ AAAAAACAAATTTTGTCACAAAATGAATATAT 111255 28 100.0 32 ............................ ACGTTCCAATAAGGTATGTTCTTCTTTCAAAT 111315 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 111375 28 100.0 32 ............................ CGCCGTATCTCTGCACACGACAAGAAAGTTAC 111435 28 100.0 32 ............................ TTATGAATTTAAAGAAAACGGCAAGCCGTCTT 111495 28 100.0 32 ............................ GCCCACAAACTTTCTTCAACTGTTCCCGCGTA 111555 28 100.0 32 ............................ GTAGTTTTATTGCTGAACATCGTCATTTTACA 111615 28 100.0 32 ............................ TGCATTATACATTCCAACAGAAATCCATTTAG 111675 28 100.0 32 ............................ CGAGCGTGCAGTTGGCGTTAGACGGCAAGCCG 111735 28 100.0 32 ............................ ACGAGTTTGTGCAATGATTTTAAGCATTGGCG 111795 28 100.0 32 ............................ AGTTGAAGTATCAGAAATTTTAATAAAGCAAT 111855 28 100.0 32 ............................ CGTGTAATAAGTTACAAATTCACCGTTTATAA 111915 28 100.0 32 ............................ TGATGTTAGAGATGGCTATGTAGGTTTTCAAA 111975 28 100.0 33 ............................ CCAAAAACTATAATTTTCTTCAAATTCCTTATC 112036 28 100.0 32 ............................ TGGTTCTTTTGGTTGAGTTTTTTATCGGCTAC 112096 28 100.0 32 ............................ TCAATCTAGCGACAATATGAAATCACGCCATT 112156 28 100.0 32 ............................ TAACATGCCTCGCACTTATGCAAGAGTTAGTT 112216 28 100.0 33 ............................ CAACAAAAAGCCAGTCATGGATGCCAAAGCTAT 112277 28 100.0 32 ............................ TTATAGATTAATGCGTAAATCTCACCATCAAT 112337 28 100.0 32 ............................ GAAAGCGAAAACGCAAGGCGAAAGCGCGCCAG 112397 28 100.0 32 ............................ ACATTGTTTTTATCTTGCCACTTTCTTGTTCT 112457 28 100.0 32 ............................ CGCGTAAAGTGGGATTTTTATTTTGAGAGAAG 112517 28 100.0 32 ............................ TATACTCACCCATTACTTTTTCAAAATAACGC 112577 28 100.0 32 ............................ ATTGGAATACGCAGTGTATTCTAACTCTACTG 112637 28 100.0 32 ............................ TTAATTTGCCGTTTTATCTCAAAATTATGAAA 112697 28 100.0 32 ............................ ACTATTGAAGCTACCTATGAACATCATCCAGT 112757 28 100.0 32 ............................ TACAGCGTCATAGTGCTTAACTTTATTTAATT 112817 28 100.0 32 ............................ TAGTGAACTCAAATCAATCTCACCAGTAATAT 112877 28 100.0 32 ............................ GTTTTTCCTTATGACAAAAACGGTATTCCACT 112937 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 112997 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 113057 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 113117 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 113177 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 113237 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 113297 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 113357 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 113417 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 113477 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 113537 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGTAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //