Array 1 64095-59925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTP01000051.1 Vibrio cholerae strain OYP1E07 Vc_OYP1E07_Contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64094 28 100.0 32 ............................ CACAACTACATTCCCGATCTTGAAATGAAGAA 64034 28 100.0 32 ............................ TTGAACAAAATGGACAAGATGAAGCGAAAATT 63974 28 100.0 32 ............................ AGTAGAAAATGGAATGTTGTATTTGACATTGC 63914 28 100.0 32 ............................ TTCCATGTTTACAACGGGCGGAAGTCGGTTAA 63854 28 100.0 32 ............................ TTAGCTAGATACTCCCTTACGTGCTTTACTAT 63794 28 100.0 32 ............................ TTCTGCCCATTTTCTCGACAGCTCCGCATTGC 63734 28 100.0 32 ............................ GTTTCAGTCGGTCGCGTGTCTTGCTGCGTTTG 63674 28 100.0 32 ............................ TGAAGTGTATCCGAAGCCCTAAGAAGTCGTAC 63614 28 100.0 32 ............................ GATTCCTTGAGACGTCAGGGACAAAGTTCAAT 63554 28 100.0 32 ............................ ATACTTAGCGCTGATAGTTTTACTGACATCGG 63494 28 100.0 32 ............................ TATACAGGTATGGCTATGAAGATTTTTCAAGG 63434 28 100.0 32 ............................ AGACCCAACGCCCGGTGACAATTTAACGCCTC 63374 28 100.0 32 ............................ ACCCGTCAGCGTTGCGTCAAAAATACCCGTTA 63314 28 100.0 32 ............................ TTTTTTGAGCACGAAAAGGGCGACATTAAATC 63254 28 100.0 32 ............................ TTGATGGATTTAAGGCATTGGAAAAACAGGGC 63194 28 100.0 32 ............................ ACTGCCTGCGTGGGTGTGACTACCCACTTTAT 63134 28 100.0 32 ............................ AGTAAGGGAAATTCGTGATGCAAACATATACT 63074 28 100.0 32 ............................ AGACCAATGCCAATACAAGCCCTGCTCTTGTG 63014 28 100.0 32 ............................ TCGAACTGATGGCGCATTCTCTGGCGCTTTCT 62954 28 100.0 32 ............................ AGACGGCAGTACAGAAAAGCGCTATACCGTCA 62894 28 100.0 32 ............................ TCAACACACTCTGAACGTATGCTACTGCATAG 62834 28 100.0 32 ............................ TGAGAACCCGAACCCTGAACCACCTAGCCCGA 62774 28 100.0 32 ............................ ACTAAACGCGCTAGGCCATTGCGCCACACGCT 62714 28 100.0 32 ............................ TCAAGCAAGTCTCGATAAGCTTCATCGCTGAG 62654 28 100.0 32 ............................ AAATGTGCGCAACTCCTGTGGGTGGTATGTTT 62594 28 100.0 32 ............................ TTCATTGAGCTTGAGCTTGTCAGCCTCAACAC 62534 28 100.0 32 ............................ AATCAGTAAAAATACGGTTGGTATTGATTTAG 62474 28 100.0 32 ............................ TTATGTTGCAAGGCTTTAGGGCGTGGTTAACA 62414 28 100.0 32 ............................ TGAATCTGAATGGCCGCTTTTAAGTAGAACTC 62354 28 100.0 32 ............................ TGACCCAGAAGATCGCCCCATGTTCTGATTGA 62294 28 100.0 32 ............................ TAACAGGAAACGCTTCTGGCGTTACTGCTGAT 62234 28 100.0 32 ............................ AGTTTGCAAGATCGACTTGATGCAATGGCTCA 62174 28 100.0 32 ............................ TTCTTGAATTTTCATCGCGCTCGTGCCTATAT 62114 28 100.0 32 ............................ AGCATTAATGCTTATCAGCTCTTGCTGAACTT 62054 28 100.0 32 ............................ TCTATAACGGTCAAATTTGTTCAAAATGTCGA 61994 28 100.0 32 ............................ TGTTCATCACTGGTTTCTGAACCGTAGGAATC 61934 28 100.0 32 ............................ GTAAGAGCTATGGCTAACGGCTCGCTATACGA 61874 28 100.0 32 ............................ TTTTTGTAGTCGTCCATATCTTGACCTGTCAC 61814 28 100.0 32 ............................ GAAGGAGAAGAAGGCGAAGTGATCTCACCCAA 61754 28 100.0 32 ............................ CATACCAGCCGCGCGCTACTACACATGCACCA 61694 28 100.0 32 ............................ TATCACACGTCCGTCAGGGTAAAAGAGCTGGT 61634 28 100.0 32 ............................ TTCAGCGAATATCTTTGATGCAAGCTCAGATG 61574 28 100.0 32 ............................ ATTTAATAAGCTAGTTAACGAGTGCCAGTTCC 61514 28 100.0 32 ............................ TATGATGAGACACAAAGCTGCTATCCCAATTG 61454 28 100.0 32 ............................ TAACCCGCACGTACATATGTTACTTAATTGGC 61394 28 100.0 32 ............................ ATCAACACCACCGAAAGAGGAATGAATCATAT 61334 28 96.4 32 .............A.............. TAAAGTGTTTGCAAGTCAAAACAGATTGATTA 61274 28 100.0 32 ............................ ACAAGTACAATTTTTCACGAATTTCCCTCAAT 61214 28 96.4 32 ...........T................ TTTTCGCAAATACTCGCCACAGACCTCGGCTA 61154 28 96.4 32 ...........T................ TGAATCAAGTGGTGGTCGGACTATCCGAACGT 61094 28 96.4 32 ...........T................ ATCGAAACGATCCACGATCAAAAAGATATCTC 61034 28 96.4 33 ...........T................ AACATGCGAGACGGCCATGGCTTCGTGTTCAAT 60973 28 96.4 32 ...........T................ TTACAGGGGCTGATTGACATCATGCAAGGGGT 60913 28 96.4 32 ...........T................ AAGTGCACAGACTCTGCTCAGATGAACTCACG 60853 28 96.4 32 ...........T................ AGAGGTAATGGGCCAGAGCGGATAACCATGCC 60793 28 96.4 32 ...........T................ TGTTTCAGCATGGTGATGCTTTTCAGGTGTTG 60733 28 96.4 32 ...........T................ GCTCATGTCCTGATCTTTAAACTCACGCGAGA 60673 28 96.4 32 ...........T................ GCTCAGTGATTTAAGCGCGTTGATGGATTGGG 60613 28 96.4 33 ...........T................ TTAATAAATTTTGTGCTGTTCTTCATTTCAAGA 60552 28 96.4 32 ...........T................ TGATAAGCCCACGGTCGAAGATATTGAGATAC 60492 28 96.4 32 ...........T................ TTGACGGTTCAGGAACTCCACTTTCTTTTTAT 60432 28 96.4 32 ...........T................ AAGCCACCAAAGGGACTCTAATTGCGTCATTA 60372 28 96.4 32 ...........T................ TTTCAGCGCTTCGGGTTCGGTGGTGACTGTAG 60312 28 96.4 32 ...........T................ TTTACGCTTCTCTCTGCGATCCCTGCGATATA 60252 28 96.4 32 ...........T................ TTTAAGTGACCGTTCTTTTGATTCGCCATTTG 60192 28 96.4 32 ...........T................ GAAGCAATCATGACCATAGACATACTCGAATC 60132 28 96.4 32 ...........T................ TATGTCGTTTGGAATCCAATCGAGCCACGTCG 60072 28 96.4 32 ...........T................ TGGCACAAGGCGGAAGCGAGGAAAGACCTCAT 60012 28 96.4 32 ...........T................ AATACGGCCATTGGACAAAGCATTGTTGAACA 59952 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 70 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAACTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGACCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3899-4105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTP01000043.1 Vibrio cholerae strain OYP1E07 Vc_OYP1E07_Contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 3899 27 100.0 33 ........................... ATTTAGAACTTCTGGCACTGTCACAGGTTTTGT 3959 27 100.0 33 ........................... ATATTAAGCCGCTGGTCGATTTGGGTGAATGGC 4019 27 100.0 33 ........................... AGTCATAACTGCGAACTACTTCCCCATTTTTCC 4079 27 96.3 0 ........C.................. | ========== ====== ====== ====== =========================== ================================= ================== 4 27 99.1 33 GTGTTCTGTCGAATAGGCAGCCAAGAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGAAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGCCATCGATAGTTTTCATCAAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : ATAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCAATTTAAGAACTGCAACGCACTTTTGCCCCTTTCCTGCTTCGTGCGATTACTCAGCAATAGATTACTCTGCTGAGTTTGCTATACGTGAGGTTATGGCAGATACCAGAACGCTGTTACATGGAATCTCCCATTTTCGAGCATCACACCGTCTATGCCCAGTAGCCTTACTTTTGCATAACAATTCGCTTAGCTAATCACCTACTCTAAAAGAAGTGGTCCAGACAAAGCCTTTCATAGAAATTGTTCTTCAGCTTATGTGCTTTTATCTAAATTTGCTTGGCACTGTAAGTGTTTAATAAACATCGGAATCTTTTTCGCCAAGTGCTTTCGGGAAGAATAAAAAGCATACAGTACTAAATCATCAGGCTCATA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGTCGAATAGGCAGCCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //