Array 1 979863-981904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZV010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA19 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979863 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 979924 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 979985 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 980046 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 980107 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 980168 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 980229 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 980290 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 980351 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 980412 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 980473 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 980534 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980595 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980656 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980717 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980778 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980839 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980900 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980961 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981022 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981083 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981144 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981205 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981266 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981327 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981389 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981450 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981511 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981572 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981633 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981694 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981755 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981816 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981877 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998037-999574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZV010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA19 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 998037 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998098 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998159 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998220 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998281 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998343 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998404 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998465 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998526 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998587 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998648 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998709 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998770 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998831 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998892 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998953 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999014 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999076 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999179 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999240 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999301 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999362 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999423 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999484 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999545 29 96.6 0 A............................ | A [999571] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //