Array 1 236-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQY01000042.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235 29 100.0 32 ............................. TGTCCAAACCTTCTACAATTCGTTGTATTTTG 174 29 100.0 32 ............................. GGCTTATGGCATCAGTCATGGCTTTTGACGTT 113 29 96.6 32 ............................T TCTTCGATTTGTATAAATATAGAAATTTGTCG 52 28 72.4 0 .........C...A......A.C-..TTT | T [34] ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : ATATTTGAATGATAAAAACCTTGAGCAATCTATCTGGATTCTTTTAGATAATTTAAATTTATTAAAATTACTTTTAGTTGCTGAAACTGATTATAGTCATTTTTTTATAAAGTTGCGAAAGTTAAATGAAAAATTTAAAGGTATTTCTAAACCATATCATCATATGTCTAAAAAAACACATACTGTTAATCAAATGAGAAGAGCAATTAATGCTGTGATTGATAATATAGTTGGTGCAAACAATATGAAACTGAAGGATTTGCATGATGATCAGATTATTCAGATATATGTTGAAGCCAGTGCGCTAAATCAAAATTGGTTAAAGCTTACTGGTAACGAGGGGGTAAGGCATCGAAAACGAAAAAAATCAGTCGGAGTTTATTCAATTGAGTTTGGATATTTAGACATTGCTTACATGTGTTGAAAAATGGATCTTCTTAAAAGTAATGAAAAATGTTATGATTTGAATTGAGGATCATTGATATAATGGGATTTGTTTA # Right flank : TAAACTAAGTGTATAATTTTTTGC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29511-29844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQY01000024.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29511 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 29572 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 29634 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 29695 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 29756 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 29817 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 6 28 91.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : TAGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 32573-33825 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQY01000024.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 32573 29 100.0 32 ............................. GCAAAAATACGTGAGTTAAGAATTAAAGACGC 32634 29 100.0 33 ............................. GTCATTAGCCATCTACAGCATCACCGCCCAACA 32696 29 100.0 32 ............................. AATAAAATCTTGACACCATACCTTAAAATCAA 32757 29 100.0 32 ............................. TCTGCTACCGAACTTAACTCATTTTTGTCAAT 32818 29 100.0 32 ............................. ACATTCTTAATTTGTTGCTCAATATTACTAGT 32879 29 100.0 32 ............................. AAATACTATTTACCAGATGAGTTTGTACTTTT 32940 29 96.6 32 ............................C GTTGATGCTAATACAATCACGATTGTCTCTAA 33001 29 96.6 32 ............................C CATTTTGAATGTTGGCAATATGTGTAGCATTA 33062 29 100.0 32 ............................. AGTAATTTTTAAATAGTCAGCGCTAAAAATTC 33123 29 96.6 32 ............................C CAAGTAACCGAATAAGCGTCCTTGTTATACTT 33184 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 33245 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 33307 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 33368 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 33429 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 33490 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 33553 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 33614 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 33675 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 33735 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 33796 29 75.9 0 ...........AC.....A.TC..T.A.. | T [33812] ========== ====== ====== ====== ============================= ================================== ================== 21 29 97.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64613-65742 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQY01000024.1 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64613 29 100.0 32 ............................. TGTGTTCTTTATTGTAGTAAGGACTTAATTTG 64674 29 96.6 32 ............................C TTAAATCAGCCTTACTAATGTTTGCAGTATCG 64735 29 96.6 32 ............................C TATACTCAATCGTTAATTTGATGCAGATTGCT 64796 29 100.0 32 ............................. GGGAACGTGGTGGATTCGATGCACAACATGCA 64857 29 100.0 32 ............................. ATGACTACGCTTACCGTTCCGACCGTGAAGTT 64918 29 100.0 32 ............................. GTTCTGTCAATCCGTATAAATTAACCCGTCCG 64979 29 100.0 33 ............................. GTTTGTGTTATTGTAGCGGTGTTAATCGCTGCC 65041 29 100.0 32 ............................. AAAGCGACTGTATGAGGTTATGATCTATCTTA 65102 29 100.0 32 ............................. GATGTTCCGCAGAATGGGCAAAAACGAATTTT 65163 29 100.0 32 ............................. CAGTATTTGACAGAATGCAAGAACAAGCTGAA 65224 29 100.0 32 ............................. GACACTGACACTACGGCTGGCGGTTTTGCAGG 65285 29 96.6 32 ............................C TCATCAAAAATAATTGTAGTTACTTTGGGATA 65346 29 100.0 33 ............................. GAACATATGTTAGGTGTTTGGGACTTTGAAGAA 65408 29 100.0 32 ............................. GTAAAAATTTACATGCTGGGTAACACAGTAAA 65469 29 96.6 32 ............................C TCATCAAAAATAATTGTAGTTACTTTGGGATA 65530 29 100.0 33 ............................. ATATGTTTCTCGTATGATATTTGCTAAAGATAA 65592 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 65653 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 65714 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //