Array 1 1004070-1005196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080126.1 Escherichia coli strain PK8568 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1004070 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 1004131 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 1004192 29 96.6 32 ............T................ GAACTTGATCTGATTTGTGAATTTATTCGATC 1004253 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 1004314 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 1004375 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 1004436 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 1004497 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 1004558 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1004619 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 1004680 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 1004741 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 1004802 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 1004863 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1004924 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1004985 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1005046 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1005107 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1005168 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1032245-1033188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080126.1 Escherichia coli strain PK8568 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1032245 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 1032306 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 1032367 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 1032428 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 1032489 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 1032550 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 1032611 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 1032672 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 1032733 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 1032794 29 100.0 32 ............................. GGATCTAACGCGCTGTCAAAATTCCGTGCTTT 1032855 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 1032916 29 96.6 32 A............................ CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 1032977 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 1033038 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 1033099 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 1033160 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2992446-2991397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080126.1 Escherichia coli strain PK8568 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2992445 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 2992385 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 2992325 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 2992265 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 2992205 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 2992145 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 2992085 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 2992025 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 2991965 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 2991905 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 2991845 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 2991784 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 2991724 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 2991664 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 2991604 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 2991544 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 2991484 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 2991424 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2998652-2997782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080126.1 Escherichia coli strain PK8568 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2998651 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 2998591 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 2998531 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 2998471 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 2998411 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 2998351 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 2998291 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 2998231 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 2998171 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 2998111 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 2998051 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 2997991 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 2997931 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 2997871 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 2997811 28 85.7 0 ....................T...C.CT | C,A [2997785,2997788] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //