Array 1 421854-423102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087226.1 Dickeya fangzhongdai strain B16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421854 29 100.0 32 ............................. GGATTATTTTGAATCCTTTCTTGCCCTGAGGA 421915 29 100.0 32 ............................. ATAAAACCCCTCTTGTAGCGCGAGATGAAAAT 421976 29 100.0 32 ............................. TTGAAATGGTCTATTCGCAGGTTGAAAGCGCC 422037 29 100.0 32 ............................. GACCACCTGGGTGGCTGGAAAAATACGCTGGA 422098 29 100.0 32 ............................. GACCACCTGGGTGGCTGGAAAAATACGCTGGA 422159 29 100.0 32 ............................. CAAGGCCGCCCGTAGCCATGCCAATGAGTCCG 422220 29 100.0 32 ............................. GCGAAAATAGCGATCAACAACTGGGACGGCAC 422281 29 100.0 32 ............................. ACATCGAGAACCGTAGCTGGCACACGAAATAC 422342 29 100.0 32 ............................. CCATTCGATCTCCCGCTTGGCCGTTCAGTGCA 422403 29 100.0 32 ............................. AACAACTTGAAAACAGATACCCCGCCCCAAAT 422464 29 100.0 32 ............................. AAATTCGAGGGCTGCCGACTGACTGCGTATCA 422525 29 100.0 32 ............................. GATGCAATGGGCACCATCCTTACCGTACTGGA 422586 29 100.0 32 ............................. TGGTTATTAAGTCCGGCTCGGTTAACGATACG 422647 29 100.0 32 ............................. AGTTCCGCGAGCAGGCGCTTGCATCAAACCTG 422708 29 100.0 32 ............................. GCGGGTTTGTACGCCGATTGGCCGACCAAAGC 422769 29 100.0 32 ............................. TTAATGTTCCGTGGAATTACTGGAATGAGCGG 422830 29 100.0 32 ............................. TGGACAACGGCAGCTGGCATATGGATGCGTAT 422891 29 100.0 32 ............................. AATGGCTGGAGTGGGTCGCAGGCGATAAAAAA 422952 29 93.1 32 ............AG............... GTGCAGAAACGGGCTTTAGTGGATGGGAATCG 423013 29 100.0 32 ............................. ACACGACGGCCGTTTACCTGGTTGTACAGGGC 423074 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGTGGTCGGCTGGCGATCTGGCTGCTGGAGGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGAAAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATATTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGACCGGTTACGGAAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAGCTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 684201-684942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087226.1 Dickeya fangzhongdai strain B16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 684201 29 100.0 32 ............................. TCAGGCTGAACAAAATCACACTCCCGGAAAGC 684262 29 100.0 33 ............................. ATGGCAGACGCTGCCGCGAAAACCGGGGTCTGC 684324 29 100.0 32 ............................. GTTGAATGTTTTTTCATACGGACCCCGCCAAC 684385 29 100.0 32 ............................. GCTCTTTCAGTCGTTCCAGAAGATAATTCATA 684446 29 100.0 32 ............................. CGGGATATTTCTGTCGCCGATAGCGTCTTCGT 684507 29 100.0 32 ............................. ACGTTGTCGTTGCTGTAATCCGTCTGCTCGAC 684568 29 100.0 12 ............................. ACCGGCGATCTG Deletion [684609] 684609 29 72.4 32 ..CC..GA.C.C.TT.............. GTGCCCCCGGCTTTACTGGGGCGGTATTATTA 684670 29 96.6 32 ............C................ CGACTGACAGTAAACCGCTCGAAACTGCTGAT 684731 29 96.6 32 ............C................ GGTCACGCGCTGGTGTCGTTTATGGATGGTAC 684792 29 96.6 32 ............C................ GATTTTGGCACGCTGGCGAGTGAAGTCGATCG 684853 29 96.6 32 ............C................ TCTTCCGGGAGTTCTGACCAATAACAACTACC 684914 29 86.2 0 ............CT...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.8 30 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCCAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCCGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTATTTAACAACATAAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCGTTTAATTTCTTTTTGGTGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTTAAATGCCAGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTACGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4028738-4029246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087226.1 Dickeya fangzhongdai strain B16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4028738 28 100.0 32 ............................ ACAGCGAGAATACTGTCACCTGGCCGGATGAC 4028798 28 100.0 32 ............................ ATGTATTCAAAATGTTCCCCACATCGTGGGGA 4028858 28 100.0 32 ............................ ATCCGGGAGTACCACATAATGCCAACATGGCC 4028918 28 100.0 32 ............................ TCCCCGGAACTGCTTGAATCACCGCAATACGC 4028978 28 100.0 32 ............................ CACCCCGCAATCGGCAGCCAGAAATTCGGAAA 4029038 28 100.0 32 ............................ TTGTTAAATAAAACGCCGGGGATATATGAAAC 4029098 28 100.0 32 ............................ TTGATGTGCTCCAGATTGACGCGGGCACCGCG 4029158 28 100.0 32 ............................ TGTGGTTTGTTGCCGCCGAATCGCGTGCCGAG 4029218 28 75.0 0 ............AC.......A..TCCC | A [4029239] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAACCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCTGCCGCCAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAGACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCAGAGACACCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTGCCCTGCTGCGCCAGCCCGAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4034819-4034009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087226.1 Dickeya fangzhongdai strain B16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4034818 28 100.0 33 ............................ CAGAACATAAACAAACGCCAGTCCTAGGACTGA 4034757 28 100.0 32 ............................ CGCCCCGGCGACAAATCTTGTTGGCCTACCCC 4034697 28 100.0 32 ............................ CTGAATTCAACACGCACGATGACCAGCTCGAT 4034637 28 100.0 32 ............................ AGCTGACGGCCACGTTGCGACCGTTCCAGAAT 4034577 28 100.0 32 ............................ TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 4034517 28 100.0 32 ............................ GGAGTACACCCACGCACCGAACTGGTCCAGAA 4034457 28 96.4 32 ............A............... GCATAGGATATTAGTCACATGAAAACCATCAA 4034397 28 96.4 32 ............A............... TGAAACGCAAAAAGATTTTGCTGGCGATCGAA 4034337 28 96.4 32 ............A............... CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 4034277 28 96.4 32 ............A............... ACTCAGGATAAGCCATGACGCTTTGTCTTATT 4034217 28 96.4 32 ............A............... AACATCCATCGGGATGATCGCTGCAGCGAATC 4034157 28 100.0 32 ............................ TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 4034097 28 100.0 32 ............................ AGTCAGGAGTTACACAGAACTGTTCTGAAAGG 4034037 27 78.6 0 ....T.......AC.........-..CG | GG [4034014] ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGATATTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTATCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4044116-4045405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087226.1 Dickeya fangzhongdai strain B16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4044116 28 92.9 32 ...........GA............... GCTGAAAAATGCCTGAATGGGTTGCCAGTATT 4044176 28 92.9 32 ...........GA............... GATCAAATCAGCCAGGCCACCGCCCGCTATAA 4044236 28 92.9 32 ...........GA............... GAAACCTACAAAAAAGGGCGGATGCCAATAAC 4044296 28 100.0 32 ............................ AACATGACGCTGGCGACATCTGAACGCTGGAA 4044356 28 100.0 32 ............................ TACAACCCGCAGGCCGGCAGCAATGAAACGTT 4044416 28 100.0 32 ............................ GCAAGAATCGCGCCTTTTTCCAGACGCATGAA 4044476 28 100.0 32 ............................ AGCTTGTCGAGGTGGAAATGCGCGGGCGTATT 4044536 28 100.0 32 ............................ CGGTGCCACCGCTGGAAGACCTGACGTTATAC 4044596 28 100.0 32 ............................ TGGCGGCGCAACTCTTCTTCACGCGCAATTTG 4044656 28 100.0 32 ............................ TGTTGCGGGAAATAATCTCGTCAGCGCGGGCG 4044716 28 100.0 32 ............................ CAGTTCTACAGCAACAGGCGACATCCCGTCAT 4044776 28 100.0 32 ............................ GCCGTATATCCCGCAAACGCCAACGGCCAGCT 4044836 28 100.0 32 ............................ TCAGGCAGTGGCATGTAACTAATGACCCTGAA 4044896 28 100.0 32 ............................ GCCGCGCTCAAGCCCTTTATCCGCTATTGCTG 4044956 28 100.0 32 ............................ AGAAACCGCGCTCGTTGTCGATGCGAGCGATA 4045016 28 100.0 32 ............................ AATGACGTAGTTGTGCGTGCAGAGGATAGTAC 4045076 28 100.0 32 ............................ GTCAGGCGCAGGCGGGCAGCAAAGGGCTATCC 4045136 28 100.0 33 ............................ CCTACACTTAATCAACGCCTGCAGGATGCCTGC 4045197 28 100.0 32 ............................ TGACTACAAAACCGTAGAAATGACGGTTGAAA 4045257 28 100.0 32 ............................ AGCACAGCCGCATCGATTGCGCCGTTCCACGA 4045317 28 92.9 32 ...........GA............... CGAAAGGGGAATAAGTCCGCGGCTTCACTGAG 4045377 27 82.1 0 ....................A..G.CG- | GG [4045398] Deletion [4045404] ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.9 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGACGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGAAGTGGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCTGACCGGCGGGCCGGCGACGGCGCGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //