Array 1 29273-27000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUM010000004.1 Lactobacillus delbrueckii subsp. lactis strain FAM 24199 FAM24199-i1-1_scf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 29272 33 100.0 33 ................................. ATTTTCAGTAAGCCCTCCTTGCAAGATTACATC 29206 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 29138 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29070 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 29002 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 28933 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 28863 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 28793 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 28724 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 28656 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 28590 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 28523 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 28454 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 28384 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 28318 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 28248 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 28180 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 28113 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 28044 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 27976 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 27909 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 27839 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 27771 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 27704 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 27638 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 27570 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 27503 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 27435 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 27367 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 27299 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 27232 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 27165 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 27099 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 27032 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 34 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 138-1214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUM010000012.1 Lactobacillus delbrueckii subsp. lactis strain FAM 24199 FAM24199-i1-1_scf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 138 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 211 36 100.0 41 .................................... GGAGCTTCTGGCCGAAGACGAATTTTGGGATGAGTACTCCA 288 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 366 36 100.0 38 .................................... ATCAACGCTCTTTGGAAACAAGTTTGACCAGTACTTGA 440 36 100.0 38 .................................... ATGACTAAAATTGAAAGTTATGTAACTCGTGAAATTGG 514 36 100.0 37 .................................... GAAAACCTAGAAAATGACATGCAGGAAAACGGTGTTT 587 36 100.0 37 .................................... AATATGTGAGTTTGTTAACTTCGTTATTTCTGAATAT 660 36 100.0 38 .................................... GCAAGCTCTGCTAGAAGCATCTAAGGAGCGTGAAGCAA 734 36 100.0 37 .................................... TCAAGAAGTTGGCGGATTTGTACAAGATCCCGACTGA 807 36 100.0 41 .................................... TCTATGACCAGGCATTACAACAGGATTGGAGAAAAGAAAAT 884 36 100.0 38 .................................... CCAACTGGGTAATCCGTTTCATCTCTAAGATGTTCAGT 958 36 100.0 35 .................................... TGAAAAAAGATATTGAATTAATAATTACTAATGAA 1029 36 100.0 40 .................................... ACAACAATATAAGTCTGATTGTGATGATTGGCTCTATGAG 1105 36 100.0 38 .................................... AGACAACGATAAAAACAGTTTGGAAGCTTTGAACGACA 1179 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CTTCGGCAGCTCGAGCGGTACGATTGGATGTTCAGTCATAATATCGTGTTCCTCCGTATTCAATTGTTAAGAACAGTATATGACTATTGACCAGGGGTTGATAGATACCGCGCTATTGGGTGCTTACGGTATTCGTAG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1248-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUM010000080.1 Lactobacillus delbrueckii subsp. lactis strain FAM 24199 FAM24199-i1-1_scf80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1247 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [1234] 1172 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [1138,1141] 1100 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 1028 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 949 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 870 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 797 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 724 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 647 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 572 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 500 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 426 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 353 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 276 36 100.0 41 .................................... GAAAATAAGGAATTGGTATTGTTGGCGGAAGAAGACCGGGA 199 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 96.7 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CTCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGGTAAGCACCCAATAGCAGAGTATATTAAAATCCCATCCTAGCAATGCTAAGATGGGATTAATCAGTTTATAGGACTTTATTTACAGTGGAGCTGGACATTCTCAGCCCATGGTAAATAGGCTTCCAG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //