Array 1 108497-106390 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUU01000006.1 Salmonella enterica strain BCW_3058 NODE_6_length_220494_cov_2.52875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108496 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 108435 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 108374 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 108313 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 108251 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 108190 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 108129 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 108068 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 108007 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 107946 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 107885 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 107824 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 107763 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 107702 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 107641 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 107580 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 107518 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107457 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107395 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 107334 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 107273 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 107212 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 107151 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 107090 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 107029 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 106968 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 106907 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 106846 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 106785 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106724 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106663 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106602 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106541 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106480 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106419 29 89.7 0 A...........TC............... | A [106392] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125881-124755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUU01000006.1 Salmonella enterica strain BCW_3058 NODE_6_length_220494_cov_2.52875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125880 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 125819 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 125758 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 125697 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 125636 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 125575 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 125514 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 125453 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 125392 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 125331 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 125270 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 125209 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 125148 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 125087 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 125026 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 124965 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 124904 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 124843 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 124782 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //