Array 1 1914705-1911945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012890.1 Lactobacillus gallinarum strain HFD4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1914704 32 100.0 34 ................................ AATGTTTAATACCGCACTTCAACAGTTTGTAATG 1914638 32 100.0 36 ................................ ATTAACAGTCCTCCTTATAAATGTAAGAATCCAGAC 1914570 32 100.0 34 ................................ ACTCTTACCGCCCGATACCGTTATCACGTTTGGA 1914504 32 100.0 34 ................................ AATAATGGATGGAGTCATTACCATCACTTTTTGT 1914438 32 100.0 34 ................................ GGAATAGTAGCCCACCAATAAAAGAAGCTAAAGC 1914372 32 100.0 34 ................................ TATTTGATAATTGTACTCGTGTGTACGTTTCCAA 1914306 32 100.0 34 ................................ TATGCTCATTCATCCAAACTGCAGCTGGATATTC 1914240 32 100.0 35 ................................ ACGCTATTGCATACATCGAAGTATCCGGACAAGGT 1914173 32 100.0 36 ................................ AAGATGATGGGTTCTGCCGCTCACGCAAACGGACAA 1914105 32 100.0 35 ................................ AAAAACATCACTAGTTTTCATCAAACAATTAGTAA 1914038 32 100.0 35 ................................ TACATTTCGTGGGCTAAGATGGGCATTGTTATACT 1913971 32 100.0 35 ................................ TGACCTTAAAATCAATCTTGCCATTACTATTTTTC 1913904 32 100.0 34 ................................ AAAAAACATAAGCACACTATTGCGCCCACAAAAA 1913838 32 100.0 34 ................................ CTTGTTGCGACAAAGTTTTGTCCGTATCAATCAA 1913772 32 100.0 35 ................................ TATCTCACCCGAATCTTTTTTTTGCTTGATCGTGC 1913705 32 100.0 35 ................................ TACTTTTTCTTTATATATTATTGGTGATCTTTGAC 1913638 32 100.0 35 ................................ AAAGGCATGGAAAACGGAACGCCAGACTTGATTGG 1913571 32 100.0 36 ................................ AGCGTACTTGAGGAATGCCTCACGAGTTCCGCCCTT 1913503 32 100.0 35 ................................ AGAAAAGCTGTTAATTCTGTTTTTAGTAATGTAAA 1913436 32 100.0 34 ................................ ACCATTGTGTCGTCCTATCGCGTCCGTCTGTCCT 1913370 32 100.0 34 ................................ AATGCCACCTGCCAAAACTTGTGCAATCACACTA 1913304 32 100.0 34 ................................ ACCTTTATTAGCTGTTATATCACTTATATGGTAG 1913238 32 100.0 35 ................................ ATGATGGTCTTGTAAATCGCATGACAAGCTTTCTC 1913171 32 100.0 36 ................................ AATTGTCAGGCATCAACTAGGAGAAAAATTATGGAG 1913103 32 100.0 34 ................................ TGATGGTGTGTTATTTGATCTAATCAAAGATGTC 1913037 32 100.0 34 ................................ AATAACATGGAGCAAATCATCAAAGAACAAGCTT 1912971 32 100.0 34 ................................ ATCATCAAGGGATCGTCCAGCCGTCTTCATCGCT 1912905 32 100.0 34 ................................ AATACCCATGACGGTTTTTATGAAGTTGCTGGTG 1912839 32 100.0 33 ................................ AGCATATGGAACGACAACTACGATACTTGTTAA 1912774 32 100.0 35 ................................ AACAAGCACAGTGGAAGGAGGTCTGCCGATTGGCA 1912707 32 100.0 35 ................................ TAATTATAAGACGATATAGGCTCGGTTGCCTGTGA 1912640 32 100.0 35 ................................ AATCCAGCCACCGCTCTTTACTGAGTAAAGTGGGT 1912573 32 100.0 34 ................................ TCCTCATAAATGTAAGAGTCCAGACCATTTTTAA 1912507 32 100.0 34 ................................ AATATTTATGGCATAGAAATAATCCAGAAAAGTA 1912441 32 100.0 34 ................................ TGCTAAAAAATAGCTGTTGCACAAATGTTGCACA 1912375 32 100.0 34 ................................ TGCTTCGGAGTTTGCGAATGCGAACGACAATGGC 1912309 32 100.0 34 ................................ ATTGTACGGCTGGCGTACGAAGCGAGGCAATTAT 1912243 32 100.0 34 ................................ AGACATTTGGTGGTTTTGATTTGGAAAATTGTCT 1912177 32 100.0 36 ................................ AAACTTGGCTTGTTGGCGGGCAAGGTCAGCTTGCTG 1912109 32 100.0 35 ................................ GATTGAATGAACTTGAATACGAGAAACTAAAAAAA 1912042 32 100.0 34 ................................ AAAGAACAAAAGGAATCAAACTACCAGAAGCAGA 1911976 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 42 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : AAGATCGTTGACAAGGAGCTAGTCGGGTACGGCTAGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //