Array 1 528685-526702 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBA01000001.1 Cronobacter dublinensis strain BJ09 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 528684 29 100.0 32 ............................. TTAAATTCTTCCTCCGTATATGCTGACAGAAG 528623 29 100.0 32 ............................. CGGGTGCTGTGGGTAGTGTCAGGAAAGGCCAG 528562 29 100.0 32 ............................. GTTCAGAAAGAGACCCAAAGCCTGGGCGTGGC 528501 29 100.0 32 ............................. GCGAAAATCGTGTTCTCCTGTTAATTGAGGAC 528440 29 100.0 32 ............................. GCGTAGAATTCTCACCCGCCCGGCTCGATACC 528379 29 100.0 32 ............................. TCTTCCATCAACTTCATCGAGTTCACCATCAT 528318 29 100.0 32 ............................. TTTTACCACATAATGATGGGGTTGAATTGGCC 528257 29 100.0 32 ............................. CCGGAGAGGTGGAGGCGGCTAACGCGGCAGCG 528196 29 100.0 32 ............................. TTGATAACAACTCGCTCGGGTTTTATCCGGTC 528135 29 100.0 32 ............................. GACGGCGTCACAAACCGCCAGGTGCGAAAAAT 528074 29 100.0 32 ............................. CCGTCACGCCAGCGAGCGGGCACATCCTGGAC 528013 29 100.0 32 ............................. GATGGTATAGATGCCACGGCCAACCAGCGAGC 527952 29 100.0 32 ............................. GTGGTTCAGTGGTGGCTGACAACACCATTGTT 527891 29 100.0 32 ............................. GGCATCAGTTCAGCTATCTGCTTACGGCTGAT 527830 29 100.0 32 ............................. ACCAGCCCCTTGCCCTGTAATTTGCGCTGCTG 527769 29 100.0 32 ............................. TCGAACTCTGCTTTAACCACCACATAGAACAG 527708 29 100.0 32 ............................. CCCCGAGCTATTAACTCAGGGCTTTTGCCATA 527647 29 100.0 32 ............................. TGCGGACCATCTTGCGGGTCAGCTCGCCGTTC 527586 29 100.0 32 ............................. CCGCTGAAGGCTTATCGTCGCGACCGGGTTAT 527525 29 100.0 32 ............................. GATGGGACGCCATGTCCAATCAGCTGATGCGG 527464 29 100.0 32 ............................. GCGGCCGCAGATAGAGCATTTTTTAATAAGAT 527403 29 96.6 32 .............G............... TTGCCAACACTATTTCTAACCTCGCCCCGCGC 527342 29 96.6 32 .............G............... GCGCTGTTTGTTGTTGAAGTCCGCGCGCGGCT 527281 29 96.6 33 .............G............... GTTGAAATTGCCGGCGTCAAAACTGAGATAGCC 527219 29 93.1 32 .A...........G............... CGAGGATAGCCGACTCCGCCGCAACGCTTGCA 527158 29 96.6 32 .............G............... CACACGCAAGAGAGCCAACGCAATTACCAGCA 527097 29 96.6 32 .............G............... CCCACATTAATCACTACTGTAACCTTTTGTTT 527036 29 93.1 32 .............G..............C CGATGAGTGATGCCGTCGATATCCAGTCGCAC 526975 29 96.6 32 .............G............... GCAGCAGATTGGCCGGGATGGTGTCAGGGTTC 526914 29 96.6 32 .............G............... GGGGACGTGGTTAACGACTATATTCGGGGGAT 526853 29 93.1 32 ..A..........G............... TGATCCCCTGCTGTGCGGCGGCCGCGCGGGCC 526792 29 96.6 32 .............G............... CGCTACGACTGGAGTGCTTTTATGGCAGAGGC 526731 29 82.8 0 ..A......C...C......A.......T | G [526708] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.0 32 GTGTTCCCCGCGCAAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGTGTTTATGTCGGTGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAACTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTCGTATAGCTTTAGA # Right flank : CTGGAATAATTCAAACGAAGGTTTAGGTTCTCCGGGAAATAGAAGCATTATTATTTTTAATAAAAATAATAACACTTCTTAAAATATCTGGTTTGTATTTTGGTTAATGGCTTTTAAAGCTTTATTACAATGTCTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAAATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGCGATCGTGCTTATAGCCAAAGTCATCATAAATGTGAACTCTTTGTTAAAGAGACTATTATTGCCGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATAGGTAAGGTGTTGATAAAATGAGGGTTCTATGCGGTTTATGGGGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 556964-555057 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBA01000001.1 Cronobacter dublinensis strain BJ09 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 556963 29 96.6 32 ............................A GATATAATGGTGTGCCAGCTTCTATTGGCAGC 556902 29 100.0 32 ............................. CTCAACCAGGCGCAGCAGCTCGAATCGCTGGC 556841 29 100.0 32 ............................. GGGATCTCGGTTTTTAGTGAGTACCTGCTGGC 556780 29 100.0 32 ............................. ATTTTTCGTGCTCTAAAACGCATCAATTTTTG 556719 29 100.0 74 ............................. ACACTGCATTTTTGCTACAGGCAGGAGGTATGGTGTTCCCCGCGCCAGAACCTGGCGCACCTGAAATAACGCCC 556616 29 100.0 32 ............................. GTTCTTGAAGAGAAACGCCGCCAGAGCAAGAA 556555 29 100.0 32 ............................. TGGTTGCACAGAATCTCTACCTGTGTCCTGTC 556494 29 100.0 32 ............................. GCGGAATTTGTCAGCAATGCGCCAGACTGGAA 556433 29 100.0 32 ............................. TGTGTATACTACCGTCGAACCGTTAGGGATAT 556372 29 100.0 32 ............................. GTTACCGGCTCCTTCCCGTTCATTGGTCTGAG 556311 29 100.0 32 ............................. CGAATAGCGCAGCCCCAACATGTTGAGGTCGT 556250 29 100.0 32 ............................. CTGATTTGCGGGATGCCAGAGCTACTACCTGA 556189 29 100.0 32 ............................. ACTGCGGAGTCAATAAAAGCGGGAAATTATCC 556128 29 100.0 32 ............................. TTCAGCAGCATCGATAATCGGACGGCAATAGT 556067 29 100.0 32 ............................. TCATCAAATCGCACTGCTTCTACTTCGATGCC 556006 29 100.0 32 ............................. TCGCTGGCGTGGGTCTCGCGGTTGAAATAGTG 555945 29 100.0 32 ............................. TCGGCGGAGGAGTTCTCGTCGAACGGGGTTGC 555884 29 100.0 32 ............................. GGTGCTCATTCAGCGCGCGCGAGAATATGGCG 555823 29 100.0 32 ............................. TCAGATAAGAGTCTCCCGCCGAAGTGCATCAT 555762 29 100.0 32 ............................. ATGTTCGACCGCCGTAGCCCCGTCGCCAGCGC 555701 29 100.0 32 ............................. GCGCGGGAAAGCGAAAATCCACCAAATTTAAA 555640 29 100.0 32 ............................. CGGGCGCTTCGCATTGAGAAGCTGACCTGTGG 555579 29 100.0 32 ............................. TGGGCCTGGAGAACCGGCGAGGAATTAATGTT 555518 29 100.0 32 ............................. ACGGGTCGACACGCCCGCCGAACGTCACGGTT 555457 29 100.0 38 ............................. TGCCTCGCCCTCGCCCGCGCTGCCAGTCGCGGCCGGAA 555390 29 100.0 32 ............................. TGGATAGATAGCGGCAAGAAGCTGCTGGTAGT 555329 29 100.0 32 ............................. CGAAACCAGTGTTCGTGAGTTCGCCGCACAGC 555268 29 100.0 32 ............................. CGTGCGACAAAGCTCTATTATTTCAGAGTGAT 555207 29 100.0 32 ............................. GGCATTGCGTTTGATGAGAGCGCCGAAGAAGC 555146 29 100.0 32 ............................. TCATGACCACAGCAGAGGTCGCAAACAGCGTC 555085 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.9 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCACACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAGAAGCGGGGTGCTAAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGTTAAATTCTGCAATCACGCTGCCTGTGCGTGTCATCATGGACTTCCACTTACCGAAAGCGAACAATCTGGTAGATGTTACCGGCCCGAAAGCACGCCGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTCAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGTTTAACCACCCGGCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGTGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTGGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTCTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCAGGCGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //