Array 1 36949-38296 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAH01000027.1 Pseudomonas aeruginosa strain PA-W48 IPC24_27.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36949 28 100.0 32 ............................ TTGGAGAGAAATCAGAGACATGAGGGGTTACT 37009 28 100.0 32 ............................ TTTCCGCGATTGCCGTTCCCGGCATGGAAGGT 37069 28 100.0 32 ............................ TAGCTCCGGACTGGTGATTTATACGTAACGTC 37129 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37189 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37249 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37309 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37369 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37429 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37489 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37549 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37609 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37669 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37729 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37789 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37849 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37909 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37969 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 38029 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 38089 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38149 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38209 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38269 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49189-46821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAH01000027.1 Pseudomonas aeruginosa strain PA-W48 IPC24_27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49188 28 100.0 32 ............................ AGTGCGAAGAACAAACATGGTTAGCTCCCTTT 49128 28 100.0 32 ............................ GCCATCGCCGCCGCCCGTTCCGCCATCACCGC 49068 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 49008 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48948 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48888 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48828 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48768 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48708 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 48648 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 48588 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48528 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48468 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48408 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48348 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 48288 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 48228 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 48168 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 48108 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 48048 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47988 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47928 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47868 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47808 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47748 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47688 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47628 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47568 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47508 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47448 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47388 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47328 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47268 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47208 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47148 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 47088 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47028 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46968 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46908 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46848 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //