Array 1 85302-89409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMQ010000003.1 Bifidobacterium adolescentis strain MSK.11.28 NODE_3_length_335073_cov_412.629, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 85302 33 100.0 34 ................................. TCCGATCTGGTTGAAGTTGATTCTACCACGCTCA 85369 33 100.0 33 ................................. ATGCTTGCTCCTTTGCTCCGGCATCGTTGGCGG 85435 33 100.0 33 ................................. GGTCAGGTCGCGGCACAGGTAGGTTTCCTGCGC 85501 33 100.0 34 ................................. CTATCTGGACTTTGCGCGGCTGTCGATGTGGCTG 85568 33 100.0 34 ................................. ATCGAACACGCCGAACGTGTCGCAACTGACGTAA 85635 33 100.0 34 ................................. ATGTCCGCATACTGCGCGACCCACACGCCGCAAT 85702 33 100.0 33 ................................. TTATAAAATGTGCGTGCCGGGTTCAATTCCCGG 85768 33 100.0 36 ................................. GCTTGTGCGGCAGATGGCACGTCGTGAAATCGGCGG 85837 33 100.0 34 ................................. ACGCCGTGCGCCTTGTTCACCACTGACGCGGGCA 85904 33 100.0 35 ................................. GGAAAATACCTTAAGGAACCGATACAGGTTGTATG 85972 33 100.0 34 ................................. CAACAGCGAGAAAAAAACATCGAAGACCTCATCA 86039 33 100.0 34 ................................. GTTGAATACTGCATGCTCAACTGGGGCATGGGCG 86106 33 100.0 34 ................................. GACAACCAGGACACCACCAGCGAATGGAAGCAGA 86173 33 100.0 34 ................................. ACCGTTGGCGCTCAGCTGGCAGGCTTGACCGATG 86240 33 100.0 34 ................................. ATCACCGTCTACGCGCAACCCTACGGAAGGAGCA 86307 33 100.0 34 ................................. TCGGATACCGCGACGCCGCGAACCTCGCCCGCAA 86374 33 100.0 33 ................................. AATCCGACCTGAGCGACATTCCGCGCCAGAAAA 86440 33 100.0 35 ................................. GAGATGAAGGATGGCGTTGAATCATGGCGGATGAT 86508 33 100.0 34 ................................. ACCGAGGTTTGCGAAGCAACTGTCAGATTGGTTC 86575 33 100.0 33 ................................. CCCAAGTACACCGAGGTTAGGCTCGTGAATCCG 86641 33 100.0 33 ................................. CCCACGGTTACAAGGTGGCTGACTATGGCACCT 86707 33 100.0 33 ................................. AATAGTCCGGGGTGTTTGTCTTCGGGTGCTTTA 86773 33 100.0 35 ................................. ATCATTCCACCTTTCGCCATTGAGCCATGTGGCGA 86841 33 100.0 34 ................................. AAAGGGTACGAGGATGAATAAACTGCAAGTGCAA 86908 33 100.0 34 ................................. ACCGCACCATTGAAACAATCCCTGATTCTGCCGG 86975 33 100.0 33 ................................. CAACAGCATGAGCGACGGCATACGAAGCCTCGC 87041 33 100.0 34 ................................. ACCGTGCAGGTGGAGGACAAGACCGACTCCCTAA 87108 33 100.0 35 ................................. TCCGAGGTTGAACACGTACTCTCCTTTGTGTTTTG 87176 33 100.0 34 ................................. TCGATGATGCCGACTTGAGCCGTGATGCTCGGCA 87243 33 100.0 33 ................................. AGGAACTCGCACGCCGTCTCAAGGAGAACGCGG 87309 33 100.0 33 ................................. CACCTGTCCGGCAAGGACGCCACATCCACCGCG 87375 33 100.0 35 ................................. TCGAGTTCAACCGGGCACGGAACGGGATGAGAGGA 87443 33 100.0 35 ................................. TCAATTTGCTTACACCCAATTGGGTGTGTATAGTG 87511 33 100.0 32 ................................. GATGACTCCATCATGGAAAGCAAGCGTATTGT 87576 33 100.0 34 ................................. ACTTTCGCTGAGAAACTAGTAGCCGGTGATGTAC 87643 33 100.0 34 ................................. CACAAGCCGCGAACGATATTCCCGCCAGCATCCT 87710 33 100.0 34 ................................. AGGAAGTCAAGCGCGGGCTGAATGGAATTGCCAA 87777 33 100.0 32 ................................. TGCATACCCTTAGTCATCAAGTCGGTAGCATC 87842 33 100.0 35 ................................. TCCACAACCGATGGTGTCACCGCGGACCAGATCAC 87910 33 100.0 35 ................................. ATTTGTCAAACACTCGCAACACTCGCAGACTGACA 87978 33 100.0 33 ................................. TCCATAAGGACTTTCACGCCACGCACGGATTCG 88044 33 100.0 34 ................................. GTAATAAGTTCATCCGTCAAGTGAATGACCGATT 88111 33 100.0 34 ................................. AAACCGGTTTCCAACACAAGCCTCGTCGGACCGA 88178 33 100.0 33 ................................. TGGTACTCATGGTTAAGCGATCAAATAGTCCAG 88244 33 100.0 34 ................................. CAGTCTTGACGTTGTCACAGCGCCGTCGCCTGAG 88311 33 100.0 36 ................................. AATGGTTTATGTGGTGTCTGTGTTGTCTTGATTTGC 88380 33 100.0 34 ................................. TATGAGTCTCTTGGTGATGCGTACAAGGCGATGT 88447 33 100.0 32 ................................. ACGCATTCCAGCAGACGGTCAACCATTGCCAG 88512 33 100.0 34 ................................. ATGGGTCTTAATGACGAAATCGAGGTGTTGTGAT 88579 33 100.0 32 ................................. CTGAATCTGCCTGAGCAGTCCCTTGGCGTCCG 88644 33 100.0 33 ................................. GACTGCGCCTTCGACGGCCTCGCCGAATGCGGC 88710 33 100.0 34 ................................. GTCAGATCCAGCAGGAGACGGTGTCGGCCGGAGA 88777 33 100.0 33 ................................. TTGCCGGCGCCGAGCAGCGCCTCGGCCACCTGG 88843 33 100.0 34 ................................. CACGCGAACCTGAACAGGGACCTGACGAACCGCA 88910 33 100.0 34 ................................. CTTGATATAAACTATATTAGCGCAGTAAATAAAG 88977 33 100.0 33 ................................. CAGTCCCGTCGGGGAAAGGGGCCACTCGCCCCG 89043 33 100.0 34 ................................. CTCCTTACTGGACGGAGACGTGTATCGCATACCG 89110 33 100.0 35 ................................. AATAATCGAATGGCGCAGATCAATACGGTCGGCTC 89178 33 100.0 33 ................................. ATGGAGTCACCCAGAGCGTACGCATGGCACAAG 89244 33 100.0 34 ................................. TAGTACATTTTGTCTGTTGTAGCCGATATTACCG 89311 33 100.0 33 ................................. ACGCCAGCGAACGACCACACGATTGTCACGACC 89377 33 93.9 0 ....T............A............... | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGACACCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGCACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCTGCATAGGCGGCTGGTCTCCAACAGAAACTGCTCCGTCGGAACCCGCCGCCCTTTTTCTTGGTTATCTGGTCATGAGGGTGTGCTCGCTGCGGTAGGAGCCTCCCTCGAATCTGACGAGCCTGCCGTGGCGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGTCCCCAGCCGGAGAACTCGATGTTCGTGGTGTAGACCACGGTAGTGCCCGAAGGTTTGCACACTTAGGGTCGTGCCCGTCCATGGGACGATGATCAGTTCGCTTCCTGCAGGTTGTCATCGAGCCGGGACATGTCGAGGTAGCGGCGCGTGCTCCATTCGTTCGCGGTGACGTACCTGGTTCTGGCGCAGATGAGCATCAACGCGCTGTTGCCGTCCGGGAAACTGCCGACGACGCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //