Array 1 3016020-3017572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045458.1 Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3016020 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3016081 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3016142 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3016203 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3016264 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3016325 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3016386 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3016447 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3016508 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3016569 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3016630 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3016691 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3016752 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3016813 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3016874 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3016935 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3016996 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3017057 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3017118 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3017179 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3017240 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3017301 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3017362 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3017423 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3017484 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3017545 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033887-3034404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045458.1 Salmonella enterica subsp. enterica serovar Anatum strain M-3471 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033887 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3033948 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3034009 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3034070 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3034131 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3034192 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3034253 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3034314 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3034375 29 93.1 0 ............TC............... | A [3034402] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //