Array 1 231906-233091 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABH01000008.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3264_R1 NODE_2_length_414808_cov_1.54344_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231906 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231967 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 232028 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232089 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232150 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232211 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGCCTC 232272 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232333 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232394 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232455 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232516 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232577 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232638 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232699 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232760 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232821 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232882 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232943 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 233004 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233064 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249761-251376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABH01000008.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3264_R1 NODE_2_length_414808_cov_1.54344_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249761 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249822 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249883 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249944 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 250005 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 250066 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250127 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250188 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250249 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250310 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250371 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250432 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250493 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250554 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250615 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250676 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250737 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250798 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250859 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250920 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250981 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 251042 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251103 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251164 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251225 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251286 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251347 29 100.0 0 ............................. | A [251374] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //