Array 1 3621228-3619427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037891.1 Salmonella enterica strain FDA925033-2-17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3621227 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 3621166 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 3621105 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 3621044 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 3620983 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 3620922 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 3620861 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 3620800 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 3620739 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 3620678 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 3620616 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 3620555 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 3620494 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 3620433 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 3620372 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 3620311 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 3620250 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 3620189 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 3620128 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 3620067 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 3620006 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 3619945 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 3619884 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 3619823 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 3619762 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 3619700 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 3619639 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 3619578 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 3619517 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 3619456 29 96.6 0 ............T................ | A [3619429] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3637644-3637372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037891.1 Salmonella enterica strain FDA925033-2-17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3637643 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 3637582 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 3637521 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 3637460 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 3637399 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //