Array 1 162932-162353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZX01000006.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N42479 N42479_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162931 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 162870 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 162809 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 162748 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 162687 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 162626 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162565 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162504 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 162443 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 162382 29 96.6 0 A............................ | A [162355] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGAGCCAGGCGTTATCTTCTGGCGTTCTTAGCG # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 322585-323589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZX01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N42479 N42479_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322585 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 322646 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 322707 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 322768 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 322829 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 322890 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 322951 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 323012 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 323073 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 323134 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 323195 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 323256 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 323317 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 323378 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 323439 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 323501 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 323562 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 339858-340982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZX01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N42479 N42479_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 339858 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 339919 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 339980 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 340041 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 340102 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 340163 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 340224 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 340285 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 340346 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 340407 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 340468 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 340529 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 340590 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 340651 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 340712 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 340773 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 340834 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 340895 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 340956 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //