Array 1 213702-211903 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBIB01000002.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213701 29 100.0 32 ............................. CGCGCGACGCATGGATCAGCGGCCGCCTGCCC 213640 29 100.0 32 ............................. GACACGAAGCAGCCGAACTACCGAAGGCATTG 213579 29 100.0 32 ............................. CATGGCGTGCCGGACAGGGAGATCATGGCGTC 213518 29 100.0 32 ............................. GGACCGTGGCGCACCGACTACGAGGCTATGGC 213457 29 100.0 32 ............................. ACCTTCTGCATATCCGCAAGAAGCTCTTTGTG 213396 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 213334 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 213273 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 213212 29 100.0 32 ............................. AAACGTGTCCTTCCCATCTCGTCGGCCATCTG 213151 29 100.0 32 ............................. TGGGTATCCGCCGCATCTCCAACAGGGAGCTC 213090 29 100.0 32 ............................. CATGCTCGCCCAAATCGCCACATCCCAGGAAC 213029 29 100.0 32 ............................. TCGCTGGGCTGGTATCCGGTGAGGGTGGCGAA 212968 29 100.0 32 ............................. CCCCTATGCCGGGTATGTGCGTTGCCTGACTC 212907 29 100.0 32 ............................. GCGTCGAGAAGCCATGTCGTAGGACTGGTGGG 212846 29 100.0 32 ............................. AGGATGCGTGCCCATCGCCATCGTATCCTCCT 212785 29 100.0 32 ............................. GATAAGGCCCTATGGCGAGTTTACGACGGCAT 212724 29 100.0 32 ............................. TGTTGGGCTTGAGCACGAAGTTCTCATTGAGA 212663 29 100.0 32 ............................. GCATCAGATGGGCCCAAGGCAAAGCCGACCGG 212602 29 100.0 32 ............................. AACATGGCGGCCAACAGCATCACATCCGACAA 212541 29 100.0 32 ............................. CTCCGTCCCAACGTGACGTTCGGAGCGGTGCA 212480 29 100.0 32 ............................. ATCGTGTCCGCCGCGATCATCGCGGACAAGCT 212419 29 100.0 32 ............................. CTCGAAATGGATTTCCCCGTCGAACCCGGTAT 212358 29 100.0 32 ............................. ACGCCCAGAGTGGGGAAATCCACGACGAATTC 212297 29 100.0 32 ............................. TTGTTGATCGTGCCGGCGATGTTCTCCACGCC 212236 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 212175 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 212114 29 96.6 32 ............................T GCCTCCCGATTCGGTGACTCCCAACCGGTCCG 212053 29 100.0 32 ............................. TACTTGGATGCAGTGAAATTGGGCGAGGCTGG 211992 29 100.0 32 ............................. TCGGACGGCGGCGTGTCGATGAAGGACAGCAT 211931 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTTGGCCCCGCACGCGCGGGGATGATCCG # Left flank : CGGTTCGTGAGGATTTTCGTGCGATGCGGAATGAGGAATCATCGTGATCGTCGTGGTATTGACGGTTTCTCCTCCTAAGCTGCGCGGTCATCTCACTCGATGGTTGTTTGAGATCTCCCCGGGCGTATATGTGGGAAAGGTCTCTTCCCGTGTTCGAGAATTGCTTTGGGATCAGATTCTTGACAACATAGGAGAAGGGCGGGCCATCATGGTCTATTCCTCCAATAATGAGCAAGGATTGGAATTTCGGACACACGGGCAGGAATGGCAGCCTGTGGATTATGAGGGCCTAGAACTGATCATGCGACCGAATACCAGCCAGAAGCAGCAACGTAATGGTGCCAAGAAGACTGGCTGGAGTCGGGCTTCTCGCTATCGTCGGTACGGAAGATAAACTGATTACAGCGAAAAAATAAGAAATACAAGGATGCGGGATGGTGACTGTGGCAATCCAATTTTTTCGGTATTTCATTCCGCGGTTTTCCGCATAAAATAACACT # Right flank : TGCGTTGAAACGCGCCGGGATCGACAAGAGCAGCTGGCCCCGTGTGCGGGGATGATACGAATTGGGAGAAATTCCCTGAATAATTTCTATCCTCCGTTGGTCCTGCGCGTGGGAGATGATCTACACAATGGCGTTATGTGCCTGTTGGCTCTGCCCTCGCGAGAATGACCTAGACCGTGATGGTCGAGTGGCTCTCAGCGTGTTGTTATTAGCTCCGTGTATACGAGGATGGCTTGTGTAACGGTGTGTGCGTGGCTGTTATCGTTCCGAGCTTGCTATCAAAAAACATTAATATACCGAATCCCGAAACACTCTGTTCCATATCGCGCGACGCGCCAAGCCACGATTAACGCAGCTGTTCCCAGCGTCTTGGTAATGTGTGTCTCGTGAATCAAACGGCATCTGATAACGCTGAAGAGTTCGGGTTCCACACCGGGGACATCGTCCAGGAGTGGTTGTGGGACGACGACGTGGATGACTCCATCCGCGCCAAGATCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229690-227270 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBIB01000002.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 229689 29 100.0 32 ............................. AGGACAAATACTCGCTTCTTGCCGCAGAGATA 229628 29 100.0 32 ............................. CCACGGCAATCGAACTCGGCAACGGCGAAGGA 229567 29 100.0 32 ............................. GACGTGGACGACCTCGTTGCCTCTGGGCTGCT 229506 29 100.0 32 ............................. CCCTCAAACGTGGACGGCCTCGGCCAGGCCTA 229445 29 100.0 32 ............................. TGGCGGCAGATCGTGTATCCGGCCATCCTGGA 229384 29 100.0 32 ............................. CTCGTGCACCGCAAGGGATACGAGGTCAAACC 229323 29 100.0 32 ............................. ACCCGCGGCCTGCTCGAGGCCATCGCCACCAA 229262 29 100.0 32 ............................. GTAGCCGTCCGGTGAAGTGAGGGGAACCCGGA 229201 29 100.0 32 ............................. GCCTCTTCTACCGTGGCGCGGTCAACGACCTG 229140 29 100.0 32 ............................. TCACGCACCTGGTTGGCGCTGACGGATTCGAT 229079 29 100.0 32 ............................. AAGGCGATCGTGGCGATGGCCAGGGATATGGC 229018 29 100.0 32 ............................. AAGCCGTTGCCCTCTGAGCTTATCGGCGTGCT 228957 29 100.0 32 ............................. AACGACACATAGGTTTTGCGGTAGCCGCGCCG 228896 29 100.0 51 ............................. AGCGCCCGCACATGGAGCGGGGACGCGTGGCGCATCACCCGTCGCGGCTCG 228816 29 100.0 32 ............................. GAGACGCGTTCATGAGTGGCCGTCTCGCGTTG 228755 29 100.0 32 ............................. AGTACATCGCGCGGTTCGCCGAATGAGAGGAG 228694 29 96.6 32 ............................T GCCAGGTCACCGTGCACACCGCCTACCCGCCC 228633 29 100.0 32 ............................. CCCATGTTGCGCAGTACGCCGGCAGCGTCCCG 228572 29 100.0 32 ............................. CTCAAGGGCAATGCTCTGGACATGTGGGACAG 228511 29 100.0 32 ............................. GCGTGGCGGTGGTTGTCCCGGGTGATGATCCA 228450 29 100.0 32 ............................. CGCCGGCGATGTTCTTGCGATACTCGACGCGG 228389 29 100.0 32 ............................. CACTTGCGATCCCGGCAGGTGGAACGCGCGTT 228328 29 100.0 32 ............................. CGTTGACGTTGCAGCTCGCGGTGATCTCGCCC 228267 29 100.0 32 ............................. TGTACGACTGCTGGGCCTGCGCCGTTGCGGCA 228206 29 100.0 32 ............................. ATCTTCTTGGCGATGCCGTTGGCGACCATGAC 228145 29 100.0 32 ............................. GTCACGGACAAGATGTTGGACTCCGGGTATCC 228084 29 100.0 32 ............................. CTGACGCCGGTTGAACAGGTGACCGGCACCCG 228023 29 100.0 32 ............................. GCCGAAACCCTCCAGCAGGTCCTCGCCAACGC 227962 29 96.6 32 ......................C...... ACGGGGTTGCAGGCGATGAAGGCGGAGATCAA 227901 29 96.6 32 .........A................... TTCAAATACGTCCCACTGTTCGGCTGGTGCGT 227840 29 100.0 32 ............................. CAGCTCAACGCCGCGCTCACCTCGCTCAGGGC 227779 29 100.0 32 ............................. GCTGCGTGCCGCCGGCAAACCGTTGCATCCCG 227718 29 100.0 32 ............................. ACAATGGACGGAAGAGGAGAAATACTCACGAC 227657 29 100.0 32 ............................. GACGCCGCAGTCAACGACGAGGCCACGCCGGA 227596 29 96.6 32 ............................T GACAATGGTCTGATCGGCAGCCTGTTTACCGG 227535 29 96.6 32 ............................T TCGCAGTTCTTCACCAGACGCATCTCGTCGGC 227474 29 100.0 32 ............................. TTTGGCGTGGACAAGGATCACGCGAGCCTAGC 227413 29 82.8 87 A...G.......C...A...........T GCATGATCCCGGTCTGTCTCACCCCAGCAGACGTTTACTCTGCACGCGCGATAACCCGTTTGCGGTCGCCTTCACGTTCGTGACTAT A [227390] 227296 27 82.8 0 .......T...--.....A.........A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 39 29 98.7 34 GTTTACCCCGCATGCGCGGGGATGATCCG # Left flank : GCCGACCGCATCTCGCTGGTGCTGACCGTGCCGGCTGATGACGTGGCCAAGGTCGAGCAGTTCCGCGATCTGATCGCCCACGAGACGCTGGCGACTTCCTTTGAGGTGAAGGAAGGCGCCGAGCTCGGTGTGGAGGTTGTTAAGGCGTGATGCTGTAACGTATTTAGTGCTCGCAGGGATTTTGGATCAGTCCAAGGTCTCTGTGGGCACGCGCCATTTGTCTGCGGGCACGCGCCATTTGATGGTGCCAGCCCCTGCATTTGCGGGGATGATCCGTTAATGATGGCCTAAAGCTGATTATGCGACTAAACTCAAGTCAAAAGCAGAAGCGCAATGGAGTTTTGAAAACCAAGAAGAAGGCTGGCTGGAGTAATGCCTCTCGATATAGGCGTTTTGTCCGATGACCGGTAGCGAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTTTTGAAGGCCCAATGCCCAATAGTTTTCGCATAAAATCGGACT # Right flank : GACAGTTCCATGAGTATTAGCCATGCTCATGGGACATTTTATCCACTGTTTTCGCGATCTCAGCGTGCGTAGTATGCGTGCCAACGTCGAGTTGTCGGTGCAAGGGTGAGTAGTGAAACCGGTTGTCCACCGTTGTTAGCGGCGGAAAACGGCTATATATAGATCCGGTCTCGACGATCGCGCACCGACAACTCGGGTTTTCAGAGCATTCGACATGAGTTGTCAAACTTGTCGTTTCGTTTCCGGAAGATCTATACTCTCTTGCATCGGTGAAGAGTACCGGCGGCAATGGTGCCGTCCGATTCGCCGATCCTCAGTAGTTCGGAGGTATGCATGTCGAAAGACGCACAGACGCAACATACGCAATCGCAACCGCCGGCGCCGGCATCGTCCGGTGCCGGTTTGCAGAAAAGCCTCAAACTCATATTCGTCTACACGGTGGCCACCGGCTGCATGTTCACGTATGTGAGTTATTGGGATTCCGTGTTCTTCAGTTATTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //