Array 1 122249-120694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSW010000008.1 Escherichia coli strain KCJ2K2543 NODE_8_length_191902_cov_17.991214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122248 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 122187 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 122126 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 122065 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 122004 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 121943 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 121882 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 121821 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 121760 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 121699 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 121638 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 121577 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 121516 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 121455 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 121394 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 121333 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 121271 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 121210 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 121149 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 121088 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 121027 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 120966 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 120905 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 120844 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 120783 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 120722 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148891-147947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSW010000008.1 Escherichia coli strain KCJ2K2543 NODE_8_length_191902_cov_17.991214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148890 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 148829 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 148768 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 148707 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 148646 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 148585 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 148524 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 148463 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 148402 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 148341 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 148280 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 148219 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 148158 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 148097 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 148036 29 93.1 32 .A.C......................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 147975 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //