Array 1 3217-4704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSQ01000032.1 Pannonibacter phragmitetus strain CGMCC9175 V4__32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3217 36 100.0 30 .................................... CGCGCACCTTGCGGGGCGTGGCAACCACCT 3283 36 100.0 30 .................................... CTGAGGTTGTGTCTCCGACTGCTGAGTTGT 3349 36 100.0 30 .................................... GTACAGCATCCGCTGCGGCCACACGTGCGA 3415 36 100.0 30 .................................... CTCGCCGGTGGCCGGGTTGCCGTTTGTCCA 3481 36 100.0 30 .................................... TCGAGGTGGAGCCCGGCACCGCATTGCCAG 3547 36 100.0 30 .................................... GCCAAACTGCCGCGCCACGAATGCTGCCAC 3613 36 100.0 30 .................................... GGCGCGGGCGCGTGAAGGGGGTGCGGACAG 3679 36 100.0 30 .................................... GCTGGCCACCAGGTCAACATCCTTGACGTT 3745 36 100.0 30 .................................... CAGGATTGAGGGCTCAAAAACGTCTGAACA 3811 36 100.0 30 .................................... AGAATGCCGGAGCGGCGTTTATAGTCCTGC 3877 36 100.0 30 .................................... CTTTTTTCGTACTTGTCGATAACTCCAGAC 3943 36 100.0 30 .................................... CCAATGGCTTCTGTTCTTGACGTGGTTCCA 4009 36 100.0 30 .................................... TGGGTAAGGTCAAGGGCTTTGCGGGCGGCG 4075 36 100.0 30 .................................... TGCGTCAGATAGTCGGCAATCTGCAGCGCC 4141 36 100.0 30 .................................... GATATTTCCGAGGGGGGTTCCTTCCTAACA 4207 36 100.0 30 .................................... GGGAAAGGGTATTTCCGTGAGTGTGTTGCT 4273 36 100.0 30 .................................... TATGGCACCGAATACACTGCGCTGGCGACG 4339 36 100.0 30 .................................... TTAATCCAATAACTCTTGACTTCTTCAGCC 4405 36 100.0 30 .................................... TGCGCCCCGCGTGGGCCGAGCTGGAGGATA 4471 36 100.0 30 .................................... ACGGCACGGGGACGGTAAATGGCTGATTAT 4537 36 100.0 30 .................................... AGAGCGGGGACAACATCGACCCGATGCGCA 4603 36 100.0 30 .................................... CGCCAACCGCAATTCCCGTATCCGATATCC 4669 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Left flank : CAGTCCAAGAGCCATGGCGCCAGCCGCCAGCCCCAGAGCCATACGGCGCGTGATGTTAAGGTCCTTGATCATTCAGTCCTCCCGTAGATGCGTTACAGCGCTGCCGGACATGGCCCGTGGCGAGCGCGCCACCGCGCTTGGTATCTCCTCCAAAGCCCGGCAAGGCTCCGGATCATTAGGCATCTTTCCTGTCCGGAACCTGTCCGGATTGTAAAAAGATGCGCTCCATGCGTGATGTTCTCTTCAGATCACCCCGCTCTTCGCTGGAGCACCAAGAATGTTGTGAAAGATCGTGCGGCCAAGGTCAAGCATCTTCAAGGCCTCGGCCCGGGCGGTGAAGTGCATCCGGCGAGGTGGCGGAGCGACATATTGAGGGCGTGAATCAAACATCAGCGTTACCCGATGGTTATTGTTGAGCCCTCAGGACAGGAAAGCCCCGTTACGTTTCCTTAGCCAGATTTAAACGGGCCGCCCATATTGCGCCGCAAATCCCGCCTGCC # Right flank : TAGGTGCCTGTCCAATTCCTTGAAACAAAAGGGGAATTGGGCAGTCCCCTGTGCGCAAAACGGCCAGAACCATCAGAACAGGGCGAGCTGTTCCGGGTTTTTCTTCCGCTTCTTGCGGGCCTGATCCGAGAACCGGACGATGTTTTCATACTGGCGGTCCGTGAACTGGAAGATGTAGATATCGCCCCATTCCGGCAGCGCCTGCTCGATCTGGCGGACATAGCTGTCAAACTTTTCCTTGCCGCTGCAGAATCTCAGGTAGTTTGAAAGCTGGCTCATTTCGAAGCCAATATCCAGCAGAAACTGGCGGAATTTGGTGGCCGCGTGCCTCTGTTTCTTCGTCTCGACCGGCAGGTCGAATGTCACCAGCATCCACATGATCCTGTATCCGCTCAAATGGGTTGCGCCGCTGTTGGCCCTGAGGTTCCGCTTGTTCATGTCTCCTCCACGTCCTCCCGGTCAGCATCTGGCTCTGGCTCCTGAGGCCTGCCGAGTGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 191489-193676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSQ01000004.1 Pannonibacter phragmitetus strain CGMCC9175 V4__4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 191489 28 100.0 32 ............................ TATGCCAGCTCGAGGATGGAAACGTCTTCAAT 191549 28 100.0 32 ............................ AGCAATTTCATGACCGTTCGCCGTGCCTTGCT 191609 28 100.0 32 ............................ TGCCAGGTTTCGCCCAGCACCGTGTTCTTGAG 191669 28 100.0 32 ............................ TGTACCTCCGAGTACACGTCGATAAGTTCCGG 191729 28 100.0 32 ............................ CTTGGCCTTGATCCAGTCGCGGGCAATACTCT 191789 28 100.0 32 ............................ CTCAACGAAGGCGATGCGCTCGCCAATCCATT 191849 28 100.0 32 ............................ ATGGACAGGCCGCGCGTTTCGCGCAGCTCTTC 191909 28 100.0 32 ............................ AACGTGTGGCGCGGCACCGCGCAGCTGCTCAT 191969 28 100.0 32 ............................ GAATCCCATCCACCACCGCGTCGGCGCATCAA 192029 28 100.0 32 ............................ CCGATCCGATCAAGCGCCGTCCAGCCGGATGG 192089 28 100.0 32 ............................ ACCCGGAAACGCTTCACCTTTCGGAAAACGTC 192149 28 100.0 32 ............................ CATAGGACCAGAGGTATCCACGCGCTCGGTCA 192209 28 100.0 32 ............................ ATCGTCACCACCTCCGCAGCGGCTGTCGCGTC 192269 28 100.0 32 ............................ AGCCATTCCGCCGTCACCCCGCCGCGCGGGAT 192329 28 100.0 32 ............................ ATCGGGATGCCGCGCACCAGGCGCAGCTGCCG 192389 28 100.0 32 ............................ TCCTCAGCGCCGCCCGTCAGCCCATCCGCATC 192449 28 100.0 32 ............................ TTTGAGGTTAGAGGGCGCCCTTGGCGATTGTG 192509 28 100.0 32 ............................ TTTGTAGGTCCGGAAATCAGTGAGGATGTCCT 192569 28 100.0 32 ............................ TATGTGGACGAGGGTCCAGCCTCCGGCACCTG 192629 28 100.0 32 ............................ TTGAAAACATCCTGGCGCGAGGGCCTGCGTGT 192689 28 100.0 32 ............................ TTCGAGCAGGGCGAGGATCATTGGTGCGCTGA 192749 28 100.0 32 ............................ CCATGTGCGGAACCGTGCAGAGTGCACAGGAT 192809 28 100.0 32 ............................ GCAACCAGAGCGCAACGCAGCAGGTCTTTGGG 192869 28 100.0 32 ............................ TATGTGTTCGGCCCTGCTCAAACGCCGCCGAA 192929 28 100.0 32 ............................ ATCGATCTGGCCGTGATGCAGCATGACAATCT 192989 28 100.0 32 ............................ CTCGACACCACGGCTCGCGGAGCCGACATCGC 193049 28 100.0 32 ............................ TTTCCGACGCGGACGCGCTGGCGCTTTTTAAC 193109 28 100.0 32 ............................ TCGGTGATCGCCCCGGCGCGCCGCGCCTTGGC 193169 28 100.0 32 ............................ TCGGGCAGAGCTTCCACCGGCACCCCGGCTCG 193229 28 100.0 32 ............................ CAAATTCTGGCACGATGATTTTGGCACTGTGC 193289 28 100.0 32 ............................ TCACGGGACCGCCGCGCGATGTTCTCGACGAT 193349 28 100.0 32 ............................ AGCTCGTCCCTGTTGTGCAGGTCCATGCTCTC 193409 28 100.0 32 ............................ CGCCGAACTGCGCAAAGACCACGCCCCGGATC 193469 28 100.0 32 ............................ CAGCACAAACTTCCGCCGCCCATTTTTTCAAG 193529 28 100.0 32 ............................ CTTTTCGCCAAGCAGTGCTGCATCCAGCAGCG 193589 28 100.0 32 ............................ AGGGCCGGAAGCTGTCTCCTGCGAGAGCCTCC 193649 28 82.1 0 .....A.............TT..T..C. | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.5 32 GCTCCCCGCCGGATAGGCGGCTGAGAGA # Left flank : CGCGCTGGAACCTTACGATCACAAGAACGCGCCGCTTCCGCCGGTCGGAAACACGCGAAGTGCTGTTCTGCAAGATCGGCGATAATTTCGCAGAAGCCAAATGGTACCGCGACCTTGCCCCCGGCACGCGCAGCAGTGACCTTATCGAGGCAGGTAACCAACTGTGTCTCACCTGTGACCTCTCTCATGTCGCCTGCTTGTTCAGGGATCTGACAGAAAATGCCTGGCGCGAGCTGTCCGGCGGGCAGCGTGACATGGAACGGGCTGACATCAAGGCCCATTTCAGGGTGTTTGTTCCCAGCTACGGGAACGAGCTGAATGTCAGCACGACTGTCACTGATTTTGCAGGCTTCACACGTGGCGGAGCGGAGGATCTTTTTTCTCCCTTCGGAAAGTCTCTTCCAAAACAATAGGTTGGACTTGCTCTTTGAAAAGATGGTATTCATGGTACCTGAAGCCTAAGCTCCTCAGGAGACTTGGCTTTTGACCTTGGCAGCACT # Right flank : ATGTGTGGTCGGCTGTTCAGAGGATTTTTCCCAAAACAAAAAGAGCGGCCCGGGGGCCGCTCCTGGGGATTGCGCTGTTCCGCCTGCTGCTCAACGGGGCAGGTTGGAGGAGCCGGTGAGGAATTCGTCCACGGCGCGGGCGGCCTGGCGGCCTTCGCGGATGGCCCAGACGACCAGCGACTGGCCGCGGCGGACGTCGCCGGCGGCAAAGACGTTGGCATAGCTCGTCTTGTAGTCCTCGGTGTTGGCCTTCACGTTGGTGCGGCCATCCAGCTCCAGCTTGCCGTCCAGCTCGGCGATGAAGGTGTCGAGGCGCGGGCCGGAGAAGCCGATGGCGGCCATCACCAGATCAGCGCGCAGGATGAACTCCGTGCCGGGGATCGGCTTGCGCTTTTCGTCCACGCGGGCGCACTTGACGCCGATGATGTGTCCGTCCTCGCCGACGAGGCCGAGGGTGGCGGCGGAGAATTCGCGCTCGGCGCCTTCGGCCTGCGAGGAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCCGCCGGATAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 115007-117943 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSQ01000005.1 Pannonibacter phragmitetus strain CGMCC9175 V4__5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 115007 31 100.0 36 ............................... AGCAAACATTACCACGAGCTCGACCTTTTCGCGGAG 115074 31 100.0 34 ............................... TTGCAGATTTCGGCGGATATCCGCACGGCAGCTG 115139 31 100.0 34 ............................... GGCCACGATCGACAAGGTCACGATCACCAACATG 115204 31 100.0 34 ............................... CCACCCGAGGACCGGCGTCACGATAGTGTTGAGG 115269 31 100.0 37 ............................... AGCGAACGTTCCGGGCCGTGGAGGCCGGGGAACTCGG 115337 31 100.0 34 ............................... CCAACCGGTAGACGTATCCCCGGCGCGCACCGCG 115402 31 100.0 36 ............................... CGTGCAGCGCTTGCAGCAGCGCGACGAGGCCGCTCG 115469 31 100.0 35 ............................... CCGGGTGGGGTTGCTGACGGGCGAAATCGACGAGG 115535 31 100.0 35 ............................... TATTTGACGCTCCCGTCATATCGCGCTATCACTGG 115601 31 100.0 36 ............................... TGTCGTGTCCAGCACCCGCAGCCGCGTCACGCCCTG 115668 31 100.0 36 ............................... GCTCGCTGCTGCCATGCTGGCACATCTGGCTGATCG 115735 31 100.0 37 ............................... CAGTCGGAGGGGGTTGGGCCGATTGCCGCAGCGTCCG 115803 31 100.0 37 ............................... GTCGAGATCGTCTAATCCTGCACCCACACAACGCGAG 115871 31 100.0 34 ............................... TTTCCGTAGCCGAGCGTTGACCCCGTCGTGTCGG 115936 31 100.0 35 ............................... TCGGTGAGGGCTATCTTGACGGCCCGACCCGCGCG 116002 31 100.0 35 ............................... ACCGACGACGAGGTGAAACGCCTGATCCTCGATTG 116068 31 100.0 34 ............................... AGCCCGCAGACGAGAGCACGCTCCCCGGCGTGAT 116133 31 100.0 33 ............................... GCGTCGAACCGCTGCGTAAGTCGAACGCGGGGG 116197 31 100.0 37 ............................... GTCAAAGTTCGGCTCCTGCCACAGACCGGGGGCCTGG 116265 31 100.0 35 ............................... GACCTGACCACGGCCAACGAGTTTGGCTGCGCAGG 116331 31 100.0 35 ............................... AAGGACGCGGGCGGCATCGGCCAGCGTGTGCGGTG 116397 31 100.0 34 ............................... TGGCAGCTCGATCAGCGGATCAACTGGCGCGGGC 116462 31 100.0 35 ............................... GATACGGACCCGTCCGGGTTTGTCTCGTACGCTGA 116528 31 100.0 37 ............................... GCCCGGCAGCGCCCGGACGCCCGAAATGAGCCGCTCG 116596 31 100.0 36 ............................... TGGCAGCTCGATCAGCGGATCAACTGGCGCGGGCTG 116663 31 100.0 35 ............................... GATTTCGATGGGCTGCCTGACAATATGGTCCGCGG 116729 31 100.0 36 ............................... AACAATCCGGTCAACGCCGCCCGCCATCAGATCGTG 116796 31 100.0 36 ............................... TTGCCGGTGGAGGTGATCGTTACCGCCGTCACGGTG 116863 31 100.0 35 ............................... GCGCATGTGCAGCAGTCGGTCAGGATCATCCTGAG 116929 31 100.0 35 ............................... TCGATGATCGCGCCCGTGTTGCCCTCGACCACGAG 116995 31 100.0 35 ............................... TGCCCGCGTCTCCTGGCTGGCCCAGCGGCTGAAGG 117061 31 100.0 35 ............................... AGCCTCGGTCAGCGTATGCTCTATGTCCGCTGTGG 117127 31 100.0 36 ............................... CACTCACGGATACCCGGCGTGGCGCTCGGCTGGTTG 117194 31 100.0 35 ............................... ATGTCCGGCGTCAGGTCGCGCAGGTCCCTGCCCTG 117260 31 100.0 35 ............................... TTGTGTGACGCCCTGCTGTTTCTGATGATCCGGGA 117326 31 100.0 35 ............................... CTGAAAGGCCCCGGCTGCCATTGAGACAGCCGGGG 117392 31 100.0 33 ............................... AGGTCGGTGAGGGCGCGTCTAACGCTGCCCGTC 117456 31 100.0 35 ............................... ACCTAACCCCGGAGGAACACTATAGATGACCGAAC 117522 31 100.0 35 ............................... CCCTCGGGCAGCAAGTAAGGCGAGAAGGTCGAACC 117588 31 100.0 34 ............................... AGAAAATCATGTGTGACAGAGATAACAGGCTGAT 117653 31 100.0 34 ............................... GCTATCTGTGTTTGCGTCGCACCGTCGAGCAACG 117718 31 100.0 34 ............................... GTCCAGCGTGCGCCATATCCCGGCGTCTCCCGTC 117783 31 100.0 35 ............................... AGCTTGACCGGCGCTATATGGAAGAACACTGGCCC 117849 31 100.0 33 ............................... CTGACCGGGCTGAAGGCGGCGGGCAGCATCTTG 117913 31 83.9 0 .............C..........GG..GG. | ========== ====== ====== ====== =============================== ===================================== ================== 45 31 99.6 35 GTCGCCCCCTCACAGGGGCGCGGATCGAAAC # Left flank : TCCCGGCGGGGCAGGGCGCCTGCGCCGCGTTGCCAAGGCCTGCCGCGACTATGGCCAGCGGGTGCAATATTCCGTCTTCGAGATCGAGGTGGACCCGGCACAATGGACCATGCTGAAAGCCCGGCTGGAAGGCATCGTCGATCTGGAAACGGACAGCCTGCGCTATTACTATCTGGGGGCGAACTGGCAGCGCCGGGTGGAACACGTGGGCGCCAAGCCCGCCGCTGACCTCAACGGCCCGCTGATCATCTAGGGCAGTTCGTTGCACCTGCGCACGTGGCCCGGTGCGGCGCAGCAGGCTTTTGTGCCGGGCGCGAACCTGAAGTGTGACCCGTTTCCCCGGCAGGTTCGCGCTCCGCCCCGCTCTTTGACATTGCTGTCTTTTCTGCCGCGCTCTGTGCCGCGCTGCCTTCGCCTTCGATCCTTGTCCACCCTTTGCCCGCAGGATCGCGCTGCGGGGCGGAATTGCATTTTGCGGCCAAACTGTTAGGACTAAACAG # Right flank : CACCACAAAAACAAAAAAAGGCCGGAGCGGTTGCCGCTCCGGCCTTTTTCAAACGCTCACTCCAACTGCATCAGGCGGCTGTTGTGGGGATGCCTTTTTCGGTGAAGACGGCCTGGAGTTCCTGGTTCTGGAACATCTCGCGCACGATGTCGCAGCCGCCGAGGAATTCGCCCTTGACGTAGAGCTGCGGGATCGTCGGCCAGTTGGTGAAGTCCTTGATGCCCTGGCGCAGGTCAGCGTCTTCCAGCACGTTGATGCCCTTGTAGGGCACGCCGATGTAGTCGAGGATCTGAACGACCTGGCCGGAGAAGCCGCACTGCGGGAAGTTCGGCGTGCCCTTCATGAACAGCACGACATCGTTCGTCTCGACTTCGTTCTTGATCCAGTCCTGGATGCTCATTGCCATGTCCTTCCGGGAGCCTTGTCCCTGATGGGCCGGGCTTGGGCCGGCCTGTGCGTTTTACAAATCAGCTGCGGGCCTGCGCCTTGCGGCACCGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACAGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 231747-232026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSQ01000005.1 Pannonibacter phragmitetus strain CGMCC9175 V4__5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 231747 29 100.0 32 ............................. GCTGCCCGGCGTATTCAGATCACGTAGTGCGG 231808 29 100.0 32 ............................. AACGCACGTGGCGCGGACCTCAAGTTGAAGGC 231869 29 100.0 32 ............................. AGCAGCTGAACGAAGAGGAAGAGCGCGGCCGC 231930 29 100.0 39 ............................. GCCGGTCCCGCTTGTGGACGCTAATAGGAATAACCCATC 231998 29 86.2 0 ...........C.AT..........G... | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 97.2 34 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCCTGCGCATCGCCCGGATGCAGGGCGGCACACTGATGCCATTGGCCGAGCCTGGCGGCCCCGGTCCTGATGCCATGGCAGAGGCCTGGGCCCTGTCCGCCCTCAGCTGCCGCAAGGCGATCCTCACCCGGCAGGGCAGGGACGCGCCCCCGGCACCGGATGCGGCAGAAGAAAAGCGCCGCGCCGCCGCCCGCGAAACCCTGCGCCGCAGCTGGCCGGAGTTCGAGGCCTCCATCGTCATCGCCATTCTGGGGGAGGACGGCCATCTGGATGCGGGCCCGGACTACAGCCGCACGCTCTTCTACTGCCGCAGGCGCGGCCTGACGAACGGTGCCGCGCGGGAATGATCCCGCACTGCCGGGGCTGCAATCAAGACGGGTTTTTCTTGCCTGCCGCAGCCCCTTGCGCCACTCTCCAATCCGCCCTCCGAAAGCCCCCGAATTTCCGGTAGCTTTCCGCTCTTTGAAATTCTACTGTCAGATCAATGCTCTCCAGCAAGA # Right flank : GGGCTAACGACGCCCCTACCCCCCGGCTCGATATATTGCAGTCAAAGTTACCGGAGAGGGATTCTTGACGAATTGCACTCTATGGAGTACATGTTTATGGTCAATGTGATCAAAACAGACGCCTTTCACCGCTGGATGAAATCCTTGGCAGACCAGCGGGCGAAGGCTCGGATTGTGATGCGGATCGACCGGCTTGCCGAAGGGAATGCGGGAGATTTTGCGCCGGTAGGCGAGGGCGTTTGCGAATTGCGGATCGATTATGGACCCGGCTACAGGGTCTACTATTTGCGGCGTGGTGAAGCCTTGGTGCTGCTTCTGTGTGGCGGTGACAAGAGCACGCAACCGGCAGACATAAGGAAGGCCCTGCAGATCGCGCGTGACTGGAAGGACGGATGATGACAACCCGGCTCAGCCCTTTTGACAGTGCCGAATATCTCGAGAGTGAAGAAGCCATCGAGGAATATATGCTTGCGGCCTTTGAAACGGAGGACCCGGCCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 241144-242270 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSQ01000005.1 Pannonibacter phragmitetus strain CGMCC9175 V4__5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 241144 29 100.0 33 ............................. TCGTGGGAAGAGCGCCACCAAGGGCCGGACAAC 241206 29 100.0 32 ............................. CGTCCGTTGGGGCTTTTCACGGCCTCGAATGA 241267 29 100.0 32 ............................. TCTGCCTGCATTTGGCGGATTGCTTCCAAGTG 241328 29 100.0 32 ............................. ACGCAGATGGAGGCCAACCATGGCTGACAAAC 241389 29 100.0 32 ............................. CACCCGTCACAGTTTCCCCCGACCGTCCGACC 241450 29 100.0 32 ............................. ATGGAAAATGATTACTTTGCGGGACTTGTCGC 241511 29 100.0 32 ............................. GCCTGGCGGGCGGGGGATCTGGCCGGGGCGGC 241572 29 100.0 32 ............................. GCGCTGCCGCCTGATGCCACTTGGACTATCGG 241633 29 100.0 32 ............................. AGCGACGACCTTAGGAAGATCGCTGAGATTTG 241694 29 100.0 32 ............................. GCCACCAGCGTGCCGCTGGCCTCCTGATCCTC 241755 29 100.0 32 ............................. GCGGTTGGGACCGGGCCAAGACCTACACGTAT 241816 29 100.0 32 ............................. ACGCCTTCCCGGAAATCCGGGCGCAGCGCGAG 241877 29 100.0 32 ............................. TTGCGCGTGAACGTGTCGATGAGGCGGCCACC 241938 29 100.0 32 ............................. GCCTGCACAGCCTGCGGCGGCGACCAGCTCAG 241999 29 100.0 32 ............................. CAGGATGGCAGCATCCATTTGCTGGGCAACCG 242060 28 96.6 32 .................-........... GACAAATCGGGCGCGCTGATCCGCAGTGGCAT 242120 29 100.0 32 ............................. CGTGCCGATGGTGGCCCGGGGCGATTCCAGCG 242181 29 100.0 32 ............................. TCCTGCAGGAAGCGGAAATGATCGCCCGAGGC 242242 29 89.7 0 .T........................T.T | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GCGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGGACTATGCCATCGATCCGGCCTTCAAGGATCCCTCTCCCTCCGGCGATGCGGGGCACCGGTCATGATGATGGTCGTCACCACCAATGCTCCGCCCCGGCTGCGCGGGCGTCTTGCCGTCTGGCTGCTGGAGGTGCGGGCAGGCGTCTACATCGGCACTTATTCGGCCCGCACGCGCGAGATGATCGCCAGTCAGGTGGCGGCGATGATCGAGGATGGCGACGCCGTGATCGCCTGGACGGCCCCCACTGACGCGGGCTTCGACTTCCAGACCTATGGCCGCAACCGGCGCATGCCCGTCGATTTCGACGGCCTGCGCCTCGTCGCCTTCCATCCGCCGGATGCCGGAAATCCGGGGCCGGGCGGGCCCGGATCAGGCTGATAGAGGCTCGCCGGACCCGTCATTCTGCCCGTCTCCGGAAGCCCTCAAAACCGCCCCAAAAACCGGTAGCTTCCTGCTCTTTGAAATTCTACAATGAGATCAATGCTCTCCAGCAAGA # Right flank : TCTCGCGGGAGAGCGTGTCCGGTGAGTTGAACAGACTGTTGTTTGAGCTTGAGTAACCACAAGAACCGCAAGGTTTGGTTGTCGCTTGACAACCTGCTCATGATGTCCATTTATGGGAGGAGAGATATTGCGCAGAGTGCATCCGGACAGGGAAATCGAAGCGGCGTTAAGGCATGCTGAAGAGAAGGGCTGGCGCATCAGGCTGGGTGGCAGCCATGCATGGGGCAAGATGTATTGTCCTTACAATGATGATAGCTGCCGCTGTGGCGAGTTTTGTGTGACGAGCATATGGAGCACGCCAAAAAATGCCGGATCACACGCAAAGGCACTGCGGCGCGTGGTGGATAAATGCTCCATGAAGACTGGAGGGAAAACGGCTCAAGGCAGAGGGGAGTGACCATGATGAAGGAATACAGCTTTACATTGAAATACCGCCTGTCTGCAGAGGACGCCGGTCATGACGCTATCGTGGAACGGCTTGGAGAGGCCGGCTGCACGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //