Array 1 100317-99161 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJJC01000005.1 Dickeya dianthicola strain WV516 Dickeya516_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 100316 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 100250 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 100185 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 100118 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 100049 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 99982 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 99916 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 99850 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 99784 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 99719 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 99652 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 99586 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 99520 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 99454 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 99388 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 99322 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 99257 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 99191 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 98988-98419 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJJC01000002.1 Dickeya dianthicola strain WV516 Dickeya516_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98987 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 98927 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 98867 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 98807 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 98747 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 98687 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 98627 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 98567 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 98507 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 98447 27 89.3 0 .......................-..CG | GG [98424] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 107703-109162 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJJC01000002.1 Dickeya dianthicola strain WV516 Dickeya516_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107703 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 107763 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 107823 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 107883 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 107943 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 108003 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 108063 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 108123 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 108183 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 108244 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 108304 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 108364 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 108424 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 108484 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 108544 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 108604 28 100.0 21 ............................ CGCACACCTCCCGCACACCTC Deletion [108653] 108653 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 108713 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 108773 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 108833 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 108893 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 108953 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 109013 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 109073 28 100.0 33 ............................ ACGACAAAAACCCGGCAGGAAATGCGATCTCGC 109134 27 85.7 0 ....................G..-..CG | AG [109152] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //