Array 1 1-2613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUA010000019.1 Acinetobacter baumannii strain A5 P_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1 30 93.3 30 ............................AG TTTGAACATCTAATAATTGAGCTGTAATAC 61 30 93.3 30 ............................GC CTCCAATTGATCCAATTGATCAACCTCCAT 121 30 96.7 30 ............................A. ATGGTGGTTGTTATAAACCGCCTAATGATA 181 30 96.7 30 ............................A. TAGAAGACGTGGACTCCCCCAACCTTTCAA 241 30 100.0 30 .............................. TGCGCTCTTGCGGTTATTATCAAAGACCTC 301 30 93.3 30 ............................AG CATGTGCTAAATCAGGGAAAAGAAAAGCCA 361 30 96.7 30 .............................A ATTATAATCGCAATAGCTTCAATACTCCTA 421 30 93.3 30 ............................AG TGCGTGAACATTATTCTTTCTGCATCAGCT 481 30 93.3 30 ............................CG GTACGTTCAACGGTCAGCAGATTTGTGTTA 541 30 96.7 30 ............................A. TAATAGTAATCGTAGTGGCGGTGTGTCAAT 601 30 100.0 30 .............................. AACTTGCTTACGGCCAACACCTGTAATCAA 661 30 93.3 30 ............................AG CCAACTTAATAGTAGAAAGGTAATGCCCTT 721 30 96.7 30 .............................A CCAAACCAATCAGCAATGGAAAAACCACCG 781 30 96.7 30 .............................A TAAAACGCGCAAAAAAATATAAGGGACGTA 841 30 100.0 30 .............................. AAACTGATTTACAAGCTTGATCAGTAGGCC 901 30 96.7 30 ............................A. CATGAAGCTTATTAAATGACTGACATGGCT 961 30 93.3 30 ............................AA AGATTCTAGCCCCCTCAATTGAGAAGTTAT 1021 30 96.7 30 .............................A TTTAGAAAGCTTGGAAAATAAAGGTGACTG 1081 30 100.0 31 .............................. TGCCGATGCGTGCAAACATTTGCTCCGCTTC 1142 30 100.0 30 .............................. ATAGATGGCTTTAACTGACTCCCAGCCCAT 1202 30 96.7 30 .............................A TAAGAAAAATGCAAAAAAGGCATTTATTAG 1262 30 96.7 30 ............................A. ACACATGTTTTTCTAATAAGAATAAGACAA 1322 30 100.0 31 .............................. ACCAGATAGCAACTCTCTAGGTCAGATAGAC 1383 30 93.3 30 ............................CC AGACTTGATTTTTATCACCATTGAAGAGTT 1443 30 96.7 30 .............................C AGGTAATAAAAAACCGCCCGAAGGCGGTAT 1503 30 96.7 30 .............................C AAAACGTATGGGTTATTGATGCTCAAGATT 1563 30 96.7 30 .............................C GTTGCTACGCGCCACGGCGCACCCATCGTT 1623 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 1683 30 96.7 30 .............................A AAATCACATCAGGGAAGTGAAGGCGAGCTA 1743 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 1803 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 1863 30 93.3 30 ............................AA TAGAATTAAAACCACGTTGATAATATAGGT 1923 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 1983 30 93.3 30 ............................GA CCCATAAATCAAACAAGCCAACATAATTGA 2043 30 100.0 30 .............................. CCTCAACTGACATTTCCAAATAGTAGAGGC 2103 30 96.7 30 ............................A. AAAGCGCACAACCCATTGATTTGTATTTTT 2163 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTGTGAAT 2223 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 2283 30 96.7 31 ............................G. AAAAAAGAGCATTTCCAGCAAAAATTGACGA 2344 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 2404 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 2464 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 2524 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 2584 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 44 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7553-7942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUA010000103.1 Acinetobacter baumannii strain A5 P_contig000103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 7553 30 96.7 30 .............................G TCGGCACAGGTAGCAGTTGAGCAGTCATCG 7613 30 96.7 30 ............................G. GTTCTTTCATAACGTAGGCTTTAATGCCTG 7673 30 100.0 30 .............................. CGTTTCCGCAAATCTGCGAAATACTCGTTG 7733 30 100.0 30 .............................. TATAGTGGCATCTTCGAGAGTTAAAGGCGG 7793 30 96.7 30 .............................T CAGAATTTTGTTTACAAGTTCTAAGCGGGA 7853 30 96.7 30 .............................G TTTGAACATCTAATAATTGAGCTGTAATAC 7913 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ============================== ================== 7 30 97.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : CTCCAATTGATCCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //