Array 1 1936258-1935154 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017550.1 Mannheimia haemolytica strain 1309 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1936257	    32	 100.0	    36	................................	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1936189	    32	 100.0	    34	................................	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1936123	    32	 100.0	    35	................................	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1936056	    32	 100.0	    36	................................	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1935988	    32	 100.0	    35	................................	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1935921	    32	 100.0	    34	................................	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1935855	    32	 100.0	    36	................................	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1935787	    32	 100.0	    34	................................	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1935721	    32	  96.9	    34	.....................T..........	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1935655	    32	  93.8	    35	G....................T..........	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1935588	    32	  93.8	    34	G....................T..........	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1935522	    32	  93.8	    35	G....................T..........	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1935455	    32	  93.8	    35	G....................T..........	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1935388	    32	  93.8	    37	G....................T..........	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1935319	    32	  93.8	    35	G....................T..........	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1935252	    32	  93.8	    35	G....................T..........	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1935185	    32	  87.5	     0	G.........T..........T.T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        17	    32	  96.5	    35	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 8.83
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCACCTACGCGTGGCTGCGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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