Array 1 54629-52172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000019.1 Desertifilum sp. FACHB-1129 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 54628 37 100.0 38 ..................................... GGCAAAATTTGAAGAGACGAAACGCGATCGTGCTTTTC 54553 37 100.0 36 ..................................... TATAGCGGCAGATGCTGAAGCCGGACAGATTATAAG 54480 37 100.0 35 ..................................... CATTGCTCAGTACGATACCCAATGCCATCCTTACT 54408 37 100.0 36 ..................................... GCATCAATGGCTGCTGAAGGAAGCCTTGGGTATAAC 54335 37 100.0 38 ..................................... GTTGCTAGGGATTCAGTGGACCGCTTGTCCAACCACTC 54260 37 100.0 33 ..................................... AAAAGTGATGTGCCAATCTCAAGCAACATTAGC 54190 37 100.0 35 ..................................... AGGCAACTGCTATGGCAACACGCAGCACCAACAAT 54118 37 100.0 38 ..................................... GCTAGAGCCTCTAAGCAGCTCAGCCGTAGAAGAATTTT 54043 37 100.0 35 ..................................... GGAATAGATCCGATCGCGCTTCCTATTTTGGTGAA 53971 37 100.0 39 ..................................... TATCAATATCATCAACAAAGCCAAACTCAAGCTTGGAAG 53895 37 100.0 36 ..................................... CGCCAAGTGCGATCGCTCCGTCATTAACATCCTCAA 53822 37 100.0 35 ..................................... GCTGCACAATCTGATGGCGTAGAGGCAGTATTGAG 53750 37 100.0 33 ..................................... AATTTCAAACAATTGGGAGTTAGACGTTGGTGT 53680 37 100.0 35 ..................................... GAAAAAAAATAGCCTCCATGAGATTTCAGGAAAGC 53608 37 100.0 35 ..................................... CCGGGCTTCAAAATGATATCTTCCACTCCATTGCA 53536 37 100.0 42 ..................................... AGGAGGAATTTATCGATAAAAATAATCCTTCGGCTGAGAAAA 53457 37 100.0 36 ..................................... ACAACACTGTGATGAAGATAAAGCTTTTGCTTAGAG 53384 37 100.0 47 ..................................... ATGAGTGCAGCCGACTTTTCCGTCCCGGAGATTGAGCGGAACCGGGC 53300 37 100.0 39 ..................................... AATACTATCTTGCAGAAGGTCGTCCAGTCCCTCCACAAT 53224 37 100.0 36 ..................................... TCAAGACTCCAAGAATTAATTTATAGAAGATTAGCA 53151 37 100.0 42 ..................................... TATGTGATGCCCGACCGGGGGAGGGTTAAAGATGCTCCTGTT 53072 37 100.0 34 ..................................... CTGATGGGAAAGATACCCCTATACATCCGATCGC 53001 37 100.0 34 ..................................... AACCCCAGGGATAGTTATCCCTATGCTATTTAGT 52930 37 100.0 33 ..................................... CGTGGATTTGGAATTTAATCTCAATAACAAAAT 52860 37 100.0 35 ..................................... CCTGAATTACAAGAACTCACTGGTGTTCGGAAAGG 52788 37 100.0 39 ..................................... TGAGTCACCCCCCGACGCGCCCCCGATGCCCAACGTTGG 52712 37 100.0 34 ..................................... ATAGATTGCCGTTGTCCCTCTGGACTGCCCAGAT 52641 37 100.0 35 ..................................... GGATTAACACCAACAACAGCACTTGCAGACATTAA 52569 37 100.0 35 ..................................... GACCCCAACGGAACCACAACGGCAGCAACACAATT 52497 37 100.0 35 ..................................... AGATGCTTCTTGAGATTCAAAGATTTGCTCAGGAA 52425 37 97.3 35 ....................T................ GCGTTGCTTTCCCGATATTTGCTTACAGCTTGGTT 52353 37 100.0 36 ..................................... AGCCATTACAGTGGGCCAGATAAAGCCCATCACATT 52280 37 100.0 35 ..................................... GCCGAAACTGAACTAATCCAGCGCGAGAAGTTTGA 52208 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== =============================================== ================== 34 37 99.8 36 ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Left flank : TGTTTGTTGTGGTGTCCTACGATATCTCTGAGGATAAGCGCCGAACCAAGATTCACAAGATTCTCAAGTCTTATGGACAATGGGTGCAATATAGTATCTTTGAGTGTTCGCTGGAGCCGACGGACTATGCTAGATTGCGATCGCGCCTACAAAAACTGATCCAAGCCGACACCGATAGCATCCGTTTCTATTTCCTCTGTGGCTGCTGTCAGGGAAAGGTGGAACGTATCGGCGGCGAAATGCCTCGCGATGAGGTGGCTTTCTTCGCCTAAGTGCGCGAGGGGGAGGGTGTAGATTTTGCGGTTATCCCCAAGTTCTTCTATACCCTCTCTGGCTAAGGTTTTCAGCGTTTGTTCTCTCAAAGATGCCCGCGCCCTTTACAGGGTAAGGCTTTCAGGCTCTGAGGCTTGTCTGTTCCCCCAGGGTATGCTATCTTTGACTCATCGCTCGCGCATCGGTACCTGGAAAACTAAATACACCAAGGCTTCTGGGTTGCCGCT # Right flank : AGAGAAAAGCATTAATCAGGGAGAAAGAAAACCTTCTCAAAACTTCCGGAGGCTGGGGCTTGACAGTGAAACAGGGAGCATGAACAATAAAATAGCTGGATTCTCTCCCTACACACCCAAGCCCGAACCTTGTTGATTGGTTTACATGAAAACTGAAGAAATCGAGATTCCCCATTCTCTGATCGTGGGATGCTGGCAACTGGACGATCGCAGTTGGACAAGCATCAGCGAACCCGAAATTGAACGCGCAATTGATACCTACTTAGCATTAGGGTTGCGCTGCTTTGATACCGCCGATATTTATGGACGTAGTGAAAGCTTAATTGGGCGGTTATTGAAAGGGCGAGACTGCACGATTTTTACCAAAGCCGTCTTTTTTGGAGAAGTCCCCACCCCTAGCCAAGTCCGTAACAAAATTGAAACCTCTTTACGCTATCTCAAGCAGAGTAGCCTAGATTGCGTGCAGGTTCACTGGCATAATCCCCAACTCGATTTTAGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 39229-43954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000001.1 Desertifilum sp. FACHB-1129 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 39229 37 100.0 36 ..................................... GACAACAACACCGGAACGAGGGGCAAAACCCACAAA 39302 37 100.0 34 ..................................... TGTATACAAGGGGAGTTTTGCAGCGTTAGCGTGT 39373 37 100.0 34 ..................................... AACTAGCACCCCAACTTCATCGATAAAGTAGAGA 39444 37 100.0 38 ..................................... CCTATTTCAGGAGGGGACAGCCTGCATATACAACGCAG 39519 37 100.0 35 ..................................... TGTAGATGTTGGCGCTCATGCAATCATTAGTTCCG 39591 37 100.0 33 ..................................... TCCTTGAATCGATGCGACTACTCACCCTATGAA 39661 37 100.0 36 ..................................... CGCGGTAGCTGCGCTCCAAGGCGGCAGCTTGTTCGG 39734 37 100.0 35 ..................................... AGGAAGACTTGGAAGTTCTTGGGGAAAAAACTAAA 39806 37 100.0 36 ..................................... ACCGCTCAATTGCCTGAATTGCTTGGCAACCTGATT 39879 37 100.0 35 ..................................... CGCGACTTGGCAGAACAAGAACGAGCGATCGCATC 39951 37 100.0 35 ..................................... CAAAGGGACATAGATCTCGCTAGACCACTCCGAGG 40023 37 100.0 34 ..................................... ATCATATCGGTATTTAAGAAATCAAAATCTTGAT 40094 37 100.0 33 ..................................... TCTCCAACGAGCGATCAGCAACCTTTAGCACTT 40164 37 100.0 35 ..................................... ATCTAGCGCTTCTTTAATTTCGCATTTGCAATTGT 40236 37 100.0 33 ..................................... GCGAGTAACCTGATTGCAAGCAAATTCTAAATC 40306 37 100.0 39 ..................................... TGATGTAGAACTCCCACTTAACCACCTTTGGCTCAACAT 40382 37 100.0 43 ..................................... GCATCTTTTTCCTGGAAAGGCGTTTGACCCGCAATGCCTGCAA 40462 37 100.0 37 ..................................... GGAAAATGTTAGAAATTGGATTTCCGGAATAATAGCT 40536 37 100.0 52 ..................................... GATGTAATGGCACGCCTAAAAGTCAATATGCAGGCGATTGAACGCCTCACCA 40625 37 100.0 35 ..................................... CACTAGGGTGGTTTTTCCGCTCCGAGTTTTGGCAA 40697 37 100.0 35 ..................................... CAGACTTGGGAAACCGAAACCGCCCGCGCATTAAA 40769 37 100.0 39 ..................................... TCGTTCAAAATGGAAGATTTAGTCGATCGCGAGTTGTAT 40845 37 100.0 44 ..................................... GTCCGCATTGCAGAGCGCTCCTATGTGGAAGCAGAGATCGGCAA 40926 37 100.0 35 ..................................... GGGAATGCCCTAATTGCAAAACCAAGCACGATAGA 40998 37 100.0 37 ..................................... CATCGCCAACGGCGAAACCTTCATCTTAAAGCTAGAG 41072 37 100.0 34 ..................................... CAGCCCTAAAAATTTAGCAATCACATCGGGACTC 41143 37 100.0 35 ..................................... AAGGCAATATCATCTTCGTTGCGGGTGGGTCGAAG 41215 37 100.0 36 ..................................... TTAGAAAAGGTTGTTTTGCATGTTGCACCAACCTTG 41288 37 100.0 35 ..................................... TTGAAAGCGTTGTCAATTTCGTGGCAAGAGTATAT 41360 37 100.0 41 ..................................... ATGCGATGCTCTGCCTTTGACCCACCGTGCAATATCGGCAG 41438 37 100.0 37 ..................................... GCGACGTGAAACTAGCATTTTCTTCGTACTGCTTGAA 41512 37 100.0 44 ..................................... ATGAAGTTGGCGTAGAGAATCGGTTCAAAGGGAAACGGGATAGC 41593 37 100.0 34 ..................................... AAAATGTCGGCGGGGATGTCGGCATACTTCAAAC 41664 37 100.0 40 ..................................... TGTTTCTGATCGGTGCAGCGATCGTAATTGGCTCATCGCG 41741 37 100.0 38 ..................................... AGGATATCGCTAGGAATTTCCTGGTAACGAAGCGCATT 41816 37 100.0 35 ..................................... GGGATAAAGCTTCTCTTTTATCTTCTAGGTTTCTT 41888 37 100.0 37 ..................................... GCGATCGCCGCGACCTGGTTGAGGATTATTTTTGCGG 41962 37 100.0 45 ..................................... GAGCGCTTGACTGCTGATTCAGCCAATTTTCTACTGCGAACTGGC 42044 37 100.0 35 ..................................... GAGCGCTTGAGGATTGTATCTTGTTTGATTTTGAG 42116 37 100.0 35 ..................................... CATTGATTCCCAAGAGATGAATCTCTCAATACTTT 42188 37 100.0 35 ..................................... CGAGAATAGCGATCGCCGTATCGCCTACGACCTCG 42260 37 100.0 34 ..................................... AGCCATCGCTAGCAGTGTGGAGCGCATATCATCC 42331 37 100.0 34 ..................................... CTGCTGCTTGACGGCATTCCAAGCGGCCAACAAG 42402 37 100.0 35 ..................................... AGAAGGAATCATCACCGTTCCGCTGCTATTGGCGG 42474 37 100.0 33 ..................................... CTGGTAGATCGAATCGTTATGCAACGCGATCAG 42544 37 100.0 34 ..................................... TCCTCGTCAAGGGCGCGATCGCTGCTGAACACCA 42615 37 100.0 34 ..................................... CTATTGATAGCTTTGCTTTAGAGGTTCCCTCTGA 42686 37 100.0 34 ..................................... GCCGAAAACGTAGACAAGAAAACCCTATATTCGG 42757 37 100.0 34 ..................................... ACTAGATTCCAAGGTAGGTGTAGACTCAACTTTT 42828 37 100.0 38 ..................................... TCCTACTGGTGAACTTAGGGCTAACTCACCCAACACCA 42903 37 100.0 36 ..................................... TCATCCGAGATTCTACTTATCTTTATATTGAGCAAG 42976 37 100.0 34 ..................................... GGTGACGGCGCTCATTAAGTTGCCGAGCTTGATT 43047 37 100.0 37 ..................................... TCAAGAATTTCTCATAATATTATTAAGCCCGATATTA 43121 37 100.0 35 ..................................... TCCGCAGTTCGGGCAATTCATAATCTTTCCTCATT 43193 37 100.0 37 ..................................... TAAAATTTGCCGATTTTTTTCACTAGATAGCCAGTTA 43267 37 100.0 35 ..................................... TTTATTTGTGAGTCTATCGTATCACATCGTCAAAC 43339 37 100.0 34 ..................................... GCGATCGCTCTTTTGTTGGCGCTCGACTTTAGCG 43410 37 100.0 34 ..................................... AAGGCTTCAGTGGATTTGCTATACTTCTGCTTTT 43481 37 100.0 37 ..................................... CAGAGCAGAAAAGCGCCAATGAATCCGAGCTTGGTTC 43555 37 100.0 37 ..................................... CCTATCTAATCCGCTTTTGAATCTTAAGAAATTGCAA 43629 37 100.0 37 ..................................... TAATCAGAGATGGGCGAATGGCTCATTTGAGATTTGG 43703 37 100.0 36 ..................................... TTGTTCTACCCCTTTTTTGGAAAGATGAACAATTGC 43776 37 100.0 33 ..................................... AATACTATTATTGATATTATTATCTTATTATTC 43846 37 100.0 35 ..................................... AGCTCGGCGGGTTGATGTTTCCTTCCGATCTATTG 43918 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ==================================================== ================== 65 37 100.0 36 ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Left flank : GGCGATCGCACAATTCACCGTTCGCCGCCAAGCGGATGCTGAGGCGCTGTTGGAGTTATCTAATTATGCGTTTCCTCACCAGAAGCGCTTGCTGATTGAGTTTTTTGCGCGACAAGCGATCGCCAAGTGGCTTCACCCATTCTGGGGAGGGGGTTTCCCGCCGCCGATGTTTCAGTTGCTTTCAGATCCGATGACTCCCTATTCTGAGATTCTGGAACGCTATCGGGGTTGGATCGATCGGGTGAAGCGGGTACAGGTTTCTGGGGGATAGGTGGCGCGAGGGGGTGGGTGTGGTTTTGCTGGCAATAGCGCGATCGCTTGTAGCTCTTGCTGGGCTTGGTCGGGAGTGCGATCGCGGCTCTCAGGGGGTCGCGCTCTATACGGGGTAAGGTTTTCAACGATTTTGGCTTTTGATTTCTGGAAAACTATGGTACATTTAGAGCAGCCTCGCGCAAACGCACCTGGAAAACTAAATAACTCAAGGGTTCTAGCCTCCCGCG # Right flank : ACAGTAGGAAAAACGGAGCGAAATCGAACAGAGAACAGACTCAAGAGAGGATCGGAGAAACAACCGTTGGGGAGGGAGGGAGTTTTTTGAGGGCTTGTAGGGCATCCGCCGCCGTTTGAAAGCGATCGCTAAAATGATAGGCTACCATTCGGTCAATCACCTCAGCCAACTCCGGGCCAACCGCAGCCAAATTGCGCCAAACCACGCCCCCCGTCTCTTGATCCTGGCGTAACTGGTGGGGGGCAATACCCGTCAGCGCCTGAATGCCAATCATCCCCAGCGCATAGAGATCGCTACTTAACCGGGGTTGTCCCACCAACTGTTCGGGCGGCGCATATCCCTTGGTCCCAATTGCCACGGTAATATTCTCAGTTTCCGGTTCCCACTGGGGTTGAATTTGCTTAACTGCACCAAAATCAATTAAACACAACCGTTGGTCAGACTCGCGGCGAATAATATTACTGGGCTTAATATCGCGATGAATCACCCGATGTTCGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 10841-6843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000002.1 Desertifilum sp. FACHB-1129 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 10840 37 100.0 36 ..................................... CTTCTCCGGACTGGTAGCCACCAACCAAAGCAATGA 10767 37 100.0 36 ..................................... TGAACGTCGGTTTTACCTTGCTGCTCGGAGTAGGTG 10694 37 100.0 35 ..................................... TGGAGAAAACTTCAGACCTTAAATCATACCTGGGG 10622 37 100.0 37 ..................................... TCTTCATCGTTCCAAAGCGTAATTCTAGAACCCCATC 10548 37 86.5 34 .GG.G.T..T........................... TCTTCATCGTTTCACGCAAAACGGCCCCGCTTTG 10477 37 100.0 41 ..................................... CAGGGAGAAGAGGCTACCCCAGACATCAGGGTACAACTGTG 10399 37 100.0 35 ..................................... TTCCCCACTTTTGCTTGTATATTTTTAATCAGCGC 10327 37 100.0 35 ..................................... CCTTGTCGCTGGCAGGATACCCCTAGAGGGCATAC 10255 37 100.0 50 ..................................... CTGGAGTGTATTCGATTTTTGAAAGAGACGAGCAAGTTGTAGCATTGCAA 10168 37 100.0 34 ..................................... AAAGCCGCCGGGGGGGGAGATCCGGAGATGAAAA 10097 37 100.0 35 ..................................... CGATCTATCTTGATGGCTTCTAGTTGATTTTTAAG 10025 37 100.0 34 ..................................... TTTTAGCCTGATTGCGGCTTGGGCCTCTTTCAAC 9954 37 100.0 35 ..................................... GGCTTGCTTAAATATCCGATTGTCCTTAGCTTTGT 9882 37 100.0 38 ..................................... TTCGATTTAAGCTGCGGTTAAAAGCTCCCATTCATCGG 9807 37 100.0 36 ..................................... TTGCCGCTAAGAGCTTGCCATGCAGTGGTAGCCTTC 9734 37 100.0 34 ..................................... CCGACATAGCGCATGGATTCGCCCAAGCTGCCGA 9663 37 100.0 35 ..................................... GCCGCCGCGACTGTGGTATTGCCTTGCTTCATCCG 9591 37 100.0 35 ..................................... CGGAAACTCTGAGAACCTGAATCCCGGAATCTTAG 9519 37 100.0 41 ..................................... GAATCCCCTAGCACACCCGCTACAGCTAGCGGCAGACCGTT 9441 37 100.0 36 ..................................... CACTTCTGGCTCTGGCTCAGATTTCTTCCGGGGCAT 9368 37 100.0 33 ..................................... TCATTCCACCACTGCCAACATCACCTGGTAAGG 9298 37 100.0 35 ..................................... TTAACCACTTATTCATAAACTCACCACCTAAAAAG 9226 37 100.0 33 ..................................... TTTAACCCCGGCCGCAATCGCGAGACGTTAAGC 9156 37 100.0 38 ..................................... CTTAAGCTGGATATTTTTAAGCGGATACGCAACTGGGA 9081 37 100.0 40 ..................................... TTTACAACGCCCTGTAAGCTGGCTTTAACCTGATCTGAGG 9004 37 100.0 34 ..................................... AGAAATTCCGAGGGAGGCATTAAAGATAATGCCC 8933 37 100.0 37 ..................................... AATGCCTAGCGCCTCCGAAAAGAAAGCGTCAACAAGT 8859 37 100.0 37 ..................................... GAAATCTCGATCAAGGCGACAGATACCAAGGCAAGTG 8785 37 100.0 34 ..................................... TCCTGCTTATGTCTGTATCCGTTATCTAGAGCGC 8714 37 100.0 36 ..................................... ACGATTTGCCTTTATTTCTGGCTTCAATATCTAGAG 8641 37 100.0 44 ..................................... TTGACGCATGGGACTAAAAGCTAGCCAACAATTCCCCTCAAAAG 8560 37 100.0 35 ..................................... GAGAAACGGGCGCGAACTTTCGCTAATTTGATAAA 8488 37 100.0 33 ..................................... GTTGTAAGTCGCCACGCCAAGGACGCGCCTCAA 8418 37 100.0 34 ..................................... GCGGTTTTGGGCTACAACGGTATTTAAAATAAAA 8347 37 100.0 34 ..................................... GATTGGTTACAGGGGACTTTTCCCAACCAAAATA 8276 37 100.0 35 ..................................... TTAGATTAAGTGAAGCTGGAGGGGAAATATTTTTA 8204 37 100.0 43 ..................................... AAAAACTGAGAGGGAGGCATCAAAGATAATGCCCCCGTGTCAG 8124 37 100.0 36 ..................................... CGCTTCAATCCGCGTGCCATCATCCATATTAAGGAG 8051 37 100.0 36 ..................................... AGCGATAATCCGGGCATGATTTCTAGAAATGCGATT 7978 37 100.0 36 ..................................... TCCATGTCAAAGCTTCGATCGCGCTGTCGCTGGGTT 7905 37 100.0 38 ..................................... CTTCTGTAGAATCGTTTTGCGCTATTGGCAACTCTATC 7830 37 100.0 34 ..................................... ACTCTAATTGCTTAAAAGCCTACTAGGAATCTAA 7759 37 100.0 39 ..................................... AAATTAAACGAAGGCAGCGATCCAAGCAATCCTAGGGTT 7683 37 100.0 34 ..................................... TACAGCAGTGCTTACCTTTCAAGAATTGCTGCTG 7612 37 100.0 35 ..................................... CCGTCACTCCATTCAAACCGAGCGGCGTACGCCAC 7540 37 100.0 33 ..................................... TAAAGCCTTTGATCGTACAGAAGCAGTGGCAGA 7470 37 100.0 34 ..................................... TGGGATGACAAGCTTTGGAACAAGAAAAAAGAAG 7399 37 100.0 39 ..................................... GGTTTCGCTGAGGGCTTCAGCTTCGACAAATTCGCAAGG 7323 37 100.0 42 ..................................... GAGGCGCTCCGAAATTTCATCCACCTCGAAGCCGGTGCCAGA 7244 37 100.0 34 ..................................... AACTGTTTGTAAACTTCAGCAGCATTGTCCTCTT 7173 37 100.0 37 ..................................... AGGATGATTGAGGTTGTTACGAAGGTGGGTAGCTAAT 7099 37 100.0 37 ..................................... TCGCAAACTCACCCAAAAAACGTTAAGGTGAATCCCC 7025 37 100.0 36 ..................................... AAGCGCGGTAATGCTGACGGTTGTACAGCCACTGCG 6952 37 100.0 36 ..................................... TAAACCTTTTTACTGGTAATCCCTACGGCTATCCAT 6879 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 55 37 99.8 36 ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : CGTCAAAAATCCGCTTGTGGATACCCCCCGGTTCTAACCCCGCGACTTGGGTTGCACCCACATCAAAGGTAAAGCCTTTGCGCTTGAAGGTGGAAGCGCACCCACCGGGGACAATTGCTAAATCGAACGCGGTGACGGGATAATTTTGATGGGCTAAAAGGGCGGCGGCGGTTAGGCCTCCAATACCAGCACCAATGACGACGACTCGCGGTTTAGTCGAACTCATGCGTTAATAATTTACAATTCTTAATAACTTTATTCTAGCGGTACGCTCTGCGCGAGGGGGTGGGTGTGGATTTTTCCCTCTCTAAGAAAATCGCTAGAACTCTTGTCTAGTCTAAGTTACAAGAAACACCCTCTCAAAACACGTCGCGCACCTTGCCCAGTAAGGTTTCTGGCGTTTCTGTCTATCTTTTTGCAGTCCCCTATGGTACATTGGAGTCAGTCTCGCGCAAGCGTACCTCGAAAACTACATAAGTCAAGGGTTCCAGAAGACCGCG # Right flank : GAGATAGGGCGATCGCGCTCTCTAAATTAAACTGAGATCCTCCCGAATAAACTCCAAGTGTGATGGTTTTATATGTGGCTGTGTTTCTCCTGAAAAGCAGCAGTGGTGAAAAATACTGAAAAGTAACAATACCTGTTGTGCCATTGGGAGCCATTGAAAATGCAGAAACCCGAACCATCTACCAACTTGCACTACCTCATCCCCTTGAGCCTTGGTTTACTCCTGCTCGTCGGTTGCAGTAGCGCCCAAACCGCAGTCAGCCCCAACCCTGAACCCTCCGTTGCACCTAGCCCAGAACAACCCGCCACCCCGCCAAGTTCAAACGAAACCAGCCAACCCCCAGGTGTTGCTCAAAATCGCCCCACCTTTCAAGCCGATAGCGACAACCCCAACTACCTGCGCGACTACGAACCCACCGAACCCCTCCCCGCCACAGGTAGAGTCACCATACGCGGCGATGCGCGACCTTTAGACCCTTCTAACTTATTTACTACCTGTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 87082-90389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000029.1 Desertifilum sp. FACHB-1129 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 87082 37 100.0 35 ..................................... AGATCCTTGGACGGGTGGAATCTGCCAATACAAAA 87154 37 100.0 35 ..................................... TGATACCTATCAGTGGCTTTCTAGGGTTGAGAAAA 87226 37 100.0 34 ..................................... TCGGCTAGTTGAACGTAGTGCTGTTTATCGCTGT 87297 37 100.0 37 ..................................... CTCTTCCTTATAATCTGTCCGGCTTCAGCATCTGCCA 87371 37 100.0 43 ..................................... ATTGCCCAAATTTCTTCAATTGCAGAAAGCATCCCACCGGATG 87451 37 100.0 34 ..................................... TTTCGAGATTACTGCGATCTGATGAAAATCGATG 87522 37 100.0 36 ..................................... GCGATCGCTGCTGATGCTCGAAACGGCTGACCTGGG 87595 37 100.0 35 ..................................... TCTGCCTTACACTTACTACCCTGGTGATGAGTATT 87667 37 100.0 35 ..................................... TAGCTTTTCCTTCTCGGCATCCTCGCGTTTTTTGA 87739 37 100.0 37 ..................................... AGGCAACTCCTCTAGGGAGCAGCCCAGCGTTTGGCAA 87813 37 100.0 37 ..................................... AAGAGAATGTTGTACTGCCAAGGATCTTGTCCGGCAG 87887 37 100.0 34 ..................................... CGGTATATTGAGCATTTACAGACCGCGATCGCGC 87958 37 100.0 34 ..................................... GAATGACGGCTCGCATTATTAAGCCTCAGTGCGA 88029 37 100.0 34 ..................................... TGGCCCCTCTCAAGATTCTAAGCTCTGCGCTCAA 88100 37 100.0 33 ..................................... GGGAGTGAATACTAATGGAATTAATCTGGAATC 88170 37 100.0 35 ..................................... TACACAATTAATAATACCGAAACCTATTCTTTTAC 88242 37 100.0 34 ..................................... ATCTTCCTTTTCTATTCCAATTTCAGCCGACCTA 88313 37 100.0 34 ..................................... ACCTACCCTCTATCTAGCTATAGTTTTCTATTCC 88384 37 100.0 35 ..................................... ATTACAGGTTGATTTGGAAGTAGAGAAGGTATATC 88456 37 100.0 34 ..................................... TCAGTAACTTGATTTTACTCACCTCTAACATTCT 88527 37 100.0 35 ..................................... AATACTTGATTGATAAACTATTTGATCTTAAACCA 88599 37 100.0 34 ..................................... ATCAAATCAGAAGAATTAAAATTAGTCGAACCTG 88670 37 100.0 35 ..................................... CGCTGCTCGATCGAATCGAGTGCGATCGCCTAGCC 88742 37 100.0 38 ..................................... ACTACCCTATCCGTGTAACCAGACTTTAACTAAATATT 88817 37 100.0 35 ..................................... GGCTCAACCACAAAGGGAAAATTAACCGATTTAAG 88889 37 100.0 36 ..................................... TTGTCGAGGATGCGGCGCTGCACATCAACAGGTAAT 88962 37 100.0 41 ..................................... AGAAACCGGCGAGACAACCTGAAAAAATCCCAATGGTGGAA 89040 37 100.0 41 ..................................... AATAAACAGAAACAGGCTATCCCCTGGTAGAATCCTTGAGG 89118 37 100.0 34 ..................................... AAAAATGCAGATTCAGGTTGGTTCGATTGTCCGA 89189 37 100.0 39 ..................................... TTAGAAAATAATGTTGACCTTGATATCGAAAATTACCGG 89265 37 100.0 35 ..................................... CCCGCTGATATCAAGCATCAAGCCGATCAATTGAT 89337 37 100.0 34 ..................................... CTATAGTAAATTTTACTCTCCCTTCGTACTTCAT 89408 37 100.0 35 ..................................... TTGACTGGTTAAAGGGACTCCCTCAACGCGATAGA 89480 37 100.0 35 ..................................... ACAATTTACGATATTTTCTACGATGAGATTCATTT 89552 37 100.0 35 ..................................... ATGATAAGAAGCCAACTGTAAGTTAGTTGTAATGA 89624 37 97.3 37 ............T........................ ATAACTAGAGTTACCACTCCCCAGAAGGATCGGACAA 89698 37 100.0 37 ..................................... TCTGGGTGCTGTGTTGTGCTGGTGAATCTGCGGCCGG 89772 37 100.0 34 ..................................... CGGAAAACTTGCATCACCAGATTAGTGAACTGTC 89843 37 100.0 36 ..................................... TGCTATACTCAAATTTGTAACCAAGGATAAAGAGAC 89916 37 100.0 41 ..................................... GTTGACAATTTGACCGATAAACTCGCCGTTCTCATCAACAG 89994 37 100.0 37 ..................................... ACGCCGAAAATGTGGATTCGCCTAATCCCGGCCTCAG 90068 37 100.0 35 ..................................... CTCGATTTATGCGGCTAACTGGCAACGATTACAGA 90140 37 100.0 34 ..................................... AGGAATTGGGGGAGGTGTAGGAGTTCCCCCACCT 90211 37 100.0 34 ..................................... TTGAGCATAATTTAAGTTTTCTTCCATGACTAAA 90282 37 100.0 35 ..................................... GGTCAGACCACAAAGGGAAAATTAACCGATTTAAG 90354 36 94.6 0 ................................-.G.. | ========== ====== ====== ====== ===================================== =========================================== ================== 46 37 99.8 36 GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : GCGGGAGTTGGTTGAGGAGATTGGCTACTGTCCGCCTCAGTTAGCTTTGTTTGGTGAATATGCCGATGCGCGGGTGGTGCGCTATGTCTTTCAAGGCGCGTTAGAGGTGGGGTTGGAGGCGCTGGTTTTGGGGGAAGGCTGGGATTTTGCCTTGCTGACGGTTGAAGAGATCCAAAAGGGCGATCGTTTTTCTCCAAAAGCAGGAGTCCGCCCCCTGGGTACGCCTCATCAGCGCATTCTGTTAGATTTTATCGCCCAAAATCGCTCTGAGTTGGCGCGGGGGGGTGGGTGTGGATTTTAAGTGTTTCTCCCAAATCGCCGAAGCCCTCTCTGGGTCTGGCTTGGCGCTGTTTTTATCGGGGTTGAGCCTCGCGCCCCTTACGCCACAAGGTTTTTAGCGTTTTCGACTATCTTTTTATTCCCCAAGATGCTATACTTCTTCTTGTGCCGCGCAAGCGAACCTCGAAAACTAAATATATCAAGCCTTCTGGGTGGCTGCC # Right flank : CTCCTGCATGAATCATGAGACATGGGTCAGTTCATAGTTGAGCAAACCAGCAATCAAGTTCAAGCGCAAGCCAAATCGCCTTCTACGGTTACGATAACGTCCTGAAAAGATCCGAAAAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 249465-245972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000004.1 Desertifilum sp. FACHB-1129 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 249464 37 100.0 35 ..................................... AGGAACATATGCGACTAAATGAAAAATGGTATAGC 249392 37 100.0 34 ..................................... TATAGAAAATAATGTTCCTTTAGACCTCGGCTCT 249321 37 100.0 39 ..................................... ACCACAACTTCGTAGACGAACACCTGAAGAACCCAAGAA 249245 37 100.0 36 ..................................... CACGCGAGAAATTTCCGAAAGAGATTTTAGATAGTC 249172 37 100.0 36 ..................................... GAGGCTATCAGCCAAGATTTTGACTTTCTCAATACC 249099 37 100.0 38 ..................................... ATCAATGAGAATGGTACATCCATCGCCAACATCATATT 249024 37 100.0 37 ..................................... TGGACGCCCAAGGACGGCTTCACGGACAAGGAAACCG 248950 37 100.0 35 ..................................... TCGCGAGGAATATCGCGCTAACTACGATCGCTCGG 248878 37 100.0 36 ..................................... GCCGCTGACCTCCTTCTGTAGCTCGTTGAGCTTGAA 248805 37 100.0 36 ..................................... CGAGAAATCCCCAAATCGCTTCGCGCCCGGTCTAGC 248732 37 100.0 35 ..................................... CTGGCAAACCTTCAGCTTGCTCGAAAAATCGCCCA 248660 37 100.0 35 ..................................... TTTACAAGCGGGTTTCTCACTTAGAATCAGAGTTT 248588 37 100.0 39 ..................................... AAAAAAGCGGCCATTGACCGCTTCATTTTTTCTAATCTT 248512 37 100.0 35 ..................................... AGACTTTCCGGCTCCGGCTATCCCTCCAAAAAATA 248440 37 100.0 38 ..................................... TTTGCTGCCCTTGAGCGAGTGGCAAGTGGTGAAGAGTC 248365 37 100.0 38 ..................................... TTCGGGGAAGAATATTTAACCCCAGACGATTTCGTGAA 248290 37 100.0 35 ..................................... AGAAGGTTTAACTCGAATAGTTGTCCCTGAGCAGT 248218 37 100.0 34 ..................................... TTTTGGGGCTTATGTAGTCCTGCATTCGCTGATA 248147 37 100.0 36 ..................................... TTTAGGATTTATTATGGCTGCTAAAAAATCTTGCTC 248074 37 100.0 37 ..................................... AGGATGGTATCGAGCATTCTTGGGCGGGTAGTCGGAT 248000 37 100.0 50 ..................................... CTGAATTGAGGTAATGAAGCGATCTTCTCACCTCATAAGAGGTTGGTCGA 247913 37 100.0 35 ..................................... AAGATGGCCGCTTTTTTAACGCCAAACTGACACAC 247841 37 100.0 38 ..................................... GGCGATCGCTTTTTGTTGGGGCATCGTTGGGAGGCGGC 247766 37 100.0 35 ..................................... AAAAAACTGGTTAAGAAATTCCTTGTCCGCATTGT 247694 37 100.0 38 ..................................... GTAGCCCAAAACCGCAACGGTTGCGGTTTTACCGTATT 247619 37 100.0 35 ..................................... GGCGGGCTTCTGTGCAAAGGATACTGCTTGAAGTT 247547 37 100.0 33 ..................................... GGCAGGGTGGGGAAGCGGTGATGACGCTGATTG 247477 37 100.0 35 ..................................... GACGCTTTCATTCCACTCGCTCTCAACATCTGGAA 247405 37 100.0 34 ..................................... GAGAAGGGCTTCAAGTCTTTGGAGTCCGCAATCT 247334 37 100.0 36 ..................................... GTTTTTCTGCAACAACTCCTAATCCAATGATTTGAA 247261 37 100.0 44 ..................................... ACAGCAATCCGAATTAGTGCGCCTCCAAGCAGCAAATCAGGCAG 247180 37 100.0 35 ..................................... AGCATTGCCGAACTTTCAACGTACCCAATTCGTTT 247108 37 100.0 37 ..................................... CAGTCTTTGCCCTGAAAGCTCCGTGCAATGGCACAAA 247034 37 100.0 39 ..................................... AAGTACCATCCCGCCCCAGTAGGAAAACGCTGCCGCCAT 246958 37 100.0 38 ..................................... TGCAACCTGTTAACCAGCAGAAGTAAGCGTACGCCCAA 246883 37 100.0 33 ..................................... GAGCAGATCCGAAAACTTGCTTTCAAGCTCTCG 246813 37 100.0 34 ..................................... ATAACTTGCGCCAGACTGACATATAAAAGGATGG 246742 37 100.0 34 ..................................... CATCAAGCCCAGTAAGATTAAGCTGAAGTATCCA 246671 37 100.0 37 ..................................... AAATAGAAAGCCATGACTACTGAAAACTTTAAGCTTG 246597 37 100.0 35 ..................................... ACAAGCGTTGGTAACTCTGTGGTGGCGTCCGTTGT 246525 37 100.0 44 ..................................... AGCGCTTGGCACCACCTTGGGGAACGTGATCTGCGGTGGAAATT 246444 37 100.0 43 ..................................... AATTGCCGGAACTGTTTGGCGACCTGGTTGTCATGCTGCGCTG 246364 37 100.0 33 ..................................... GGCAGCCGTGCCAGGACTTCCACCTAAGTACAT 246294 37 100.0 37 ..................................... TTAAATCGCGCATGATTCACCTAAAATTTTGCACCGC 246220 37 100.0 33 ..................................... CTGAGCCATTGCCCTATCACCTCCTCTACCCAT 246150 37 100.0 35 ..................................... AGGTTCAGAGAAATGCGAACCCTGCGGATCTTAGA 246078 37 100.0 33 ..................................... TTGCCTGTCGCCTTTGGATAATCTCCAGGCTGA 246008 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 48 37 100.0 37 ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Left flank : GTGGTGAACCCTGCGGCGAAGAGTAATAAAAGCAGTCCGATCTACGGAATGCCAATTTTAGAGGTAGACAAGGCAAAACATACGATTGTTGTGAAGCGCAGCATGAGTACCGGGTTTGCTGGGGTTGATAATGACTTGTTCTACAAGGATAAGACGATGATGCTGTTTGGTAATGCCAAGGATGTGATTGCCAAGCTCGTTTCGGAAGTGAAGCAACTCTAAGCCCAGAGTCGTTTGCGGAGGAAGGGAAGAGGGTTATCCCTTCCTCTGTTGGGCGCGAGGGGGTGGGTGTAGATTTCAGCGATTGTGAGGTAGCCGCTAGAAGCCCCCAGGCGCAAGGTTTTGAGTTGACTTGGCTATTCTTGAGCCTCGCGCACCTGATCTCACAAGGGTTTTAGCGATTTGGACTATCTTTTGTCTGGGCAATATGCTACATTAAGTTCAGCCTCGCGCAAATGCACCTGGAAAACTAAATATACCAAGGCTTTCGGGCGTCCGCG # Right flank : AGCAAAGACTTTTAGAAACACGATCGAACAAGCGATCGCCCTCAAGCAACCCCCTATAATCCCTAGAAGAGAGAGAACCCAAGAAGCTCAGAGAACCTCTCAAGCGCGCTGTCGCAAAAGCTGCTGCCATCTAACCTTCAGCGCCACATAGAGAGGAAATTGAAAATGCTCCAAAACCAGCCAACTCACAAAACTCAAATGAGAGAAAAACGTGAGAACCGTCCACACAACAGGGAACCAGTAAGCCGAACAGATCCCGCCACTTTGGAGCAAATCCCAAGGCGAGAGAGTCGTGCAATAGCTGTTTGGCATTGGGGGGAACGTGTGATACGCCAACCCAATTAACGTAGGGGGTAAGAAAACGAGCGCAATACCCACTAGCCAAATTTCCCAGGTTAAATCTAAATCTTCGCGACGATGGGTGGCTTTCCAGGTTTTCCCCGTCCATCGCCAAGAAAGCGGTTGGGAACCATCCACCACCTGAACTCTTTGTTTATCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 41276-48133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000042.1 Desertifilum sp. FACHB-1129 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 41276 37 100.0 35 ..................................... TGCCCACACCGGCCTGGATTGTAATTGAGAGGTGG 41348 37 100.0 38 ..................................... CCTACTAATGAAGAGCTTATTTATCCTCATCTCCAGGA 41423 37 100.0 36 ..................................... TTACCTTGCTGCTCGGAGTAGGTGCGATCGCACTTA 41496 37 100.0 35 ..................................... GAGCTTGCTCAAGTGGATCGCGGGGGGCGGCTTGT 41568 37 100.0 35 ..................................... CCGCAAGCCTTCAGGGTCTTTCGTATCCTTCTCAA 41640 37 100.0 34 ..................................... CAATTTGCCGATTACCGCTCTGGTGATTGCGATG 41711 37 100.0 34 ..................................... CGGCATCTTGTAGAGCCTACCGCCGCGATGTCGC 41782 37 100.0 34 ..................................... TTGCTGACGTGCCTTTAGGGGAACCAATTCCAGG 41853 37 100.0 36 ..................................... GGTTCCATTGCCGTTGTCTGTGAACAACTCAGCAAC 41926 37 100.0 34 ..................................... CAACGCTTCCCCCCAAATGGCGAAAGCGCTAGCC 41997 37 100.0 35 ..................................... CAGCAGCGTAGCCTTTGCGAACAGCAGACGAAAAC 42069 37 100.0 34 ..................................... GAAGTCCACACCGCAACCGAACGCTACGAACGGT 42140 37 100.0 36 ..................................... TGATGACCGGGGTGGGATCATCTCCCTGGACAACTG 42213 37 100.0 36 ..................................... TTCCTCATTGCTTAAAAAAGCAATGAAATATGTTTG 42286 37 100.0 39 ..................................... GCGCGAGAGGCTTTGATATCTGGGATGAGCCAGCCTGAC 42362 37 100.0 35 ..................................... AAATTCTGCAAGAAAATGGAATCCAATACACAGCT 42434 37 100.0 37 ..................................... AGTTTAACTTGGGAATTCGATAACAAGAAAGAATCGA 42508 37 100.0 35 ..................................... CAATCAACTCCTCTTCAGTGGGTTCCAATTCAAAT 42580 37 100.0 35 ..................................... CAATTCCTAAAGCTTTAAGTCTTCTATTTGCTAAA 42652 37 100.0 34 ..................................... GGCTGATGAAATTCAATTTATTTCCGCAATTCGG 42723 37 100.0 35 ..................................... TTCTGAAGCCTGAGCAACCAAGCTGCTCAGTAGAT 42795 37 100.0 38 ..................................... CTCTTATCCTTAATGCTGGACGCGATCGCACTTTTAAC 42870 37 100.0 31 ..................................... GCCGCAATTCCGTCAATGGTTTCGGGAGACG 42938 37 100.0 36 ..................................... AAGCCCTATACCAATTTCCTGCTTACTCTCCCAGGA 43011 37 100.0 38 ..................................... CGGGAAGCCCGCGCCAATCAAGCAATTGAGGAATTGGA 43086 37 100.0 40 ..................................... GCTTGGTATTGACCCCCTTGAACGAATTCATTATTTTCTG 43163 37 100.0 35 ..................................... AAAAATTACGGCAGCAAGAATACCGCCATTGGGGA 43235 37 100.0 32 ..................................... AAATAGACATAGCGCCCTCAAGACGTGCGGAA 43304 37 100.0 33 ..................................... GATATTCCGGCTGATATCAAGCATCAAGCCGAT 43374 37 100.0 40 ..................................... TTGTATTTGCCACCACTGATTGGATTGGCATCTTTCAGAA 43451 37 100.0 36 ..................................... TACCATCGCTGGAAAGCAGTGCTAAAATTAGATTGG 43524 37 100.0 34 ..................................... TGCTTTACTGCTTGAGTAAAACTTGAAGGTTGTA 43595 37 100.0 41 ..................................... CGGCTGGCGTATTCTATTCCTCTGGCGCGAACGGCTCCGGT 43673 37 100.0 35 ..................................... CCTGACCTTCCCCAAAACTGGAACCCACAAGACTA 43745 37 100.0 35 ..................................... GCCCTCGTATTCCCATCCGCATTGATCGCAGCAGT 43817 37 100.0 39 ..................................... GGCTAAATTTCGATTCTACCGCTCCGAAGGAATCATAGA 43893 37 100.0 32 ..................................... CAGTGAATCACAAATCTGGACTAGGCGATCTC 43962 37 100.0 34 ..................................... CTTATTTTAGAACCAATCTTAAATACCCAAGATT 44033 37 100.0 34 ..................................... TTATAGGTGCCATAAGTAGCGATATATACTCCAG 44104 37 100.0 35 ..................................... TCCGTGAGAGAGATTAAAATTAGCAACCCCTTATC 44176 37 100.0 34 ..................................... CTGGTAAATGTTTGCAATATACTTATTACGTTCT 44247 37 100.0 35 ..................................... TTCTAAATCTTCAAGAGACCAATCTATTAAAGTAA 44319 37 100.0 38 ..................................... GGCTCGACGAACATTAACGGACGCGATCGCAGATTATA 44394 37 100.0 34 ..................................... GCAAAGATAAAAGCTGTTTGCAAGGTAACAAAAG 44465 37 100.0 37 ..................................... CAGATTATGAGCAGCACTAGGAAGTGCGCCGGATAGA 44539 37 100.0 37 ..................................... TACGCTCCCCGCCGTCACCCTCCACCCGTGGTGCGTG 44613 37 100.0 35 ..................................... ACCGCTCCCCGGATTTTCCTTTCGGTATCTAGCTA 44685 37 100.0 30 ..................................... AAAGTAGGCGATCGCCCGGTTTATTTGAGA 44752 37 100.0 34 ..................................... CTGGCTCTTTTGCCTTTGAGGTTGCTTCCTTAGC 44823 37 100.0 39 ..................................... CAATTTTACACTACGCCACAAGAACAAGACAGCAATAAT 44899 37 100.0 36 ..................................... CATCGGCTCATAGATTCGGAAACAATCCGCAATACT 44972 37 100.0 37 ..................................... TCGCTTTGCAATTGGGAGACACATGAGATGGAATTGA 45046 37 100.0 38 ..................................... ATCGGCTTTGCAATCAAAATCTTTATGGAGTTATAAAA 45121 37 100.0 34 ..................................... ACCTCCGATAAAGACGGGAATGTTTCCGGTTACT 45192 37 100.0 41 ..................................... TGTATCAAGACTAACCACATTCTCTATTTGTCGTGCAACGT 45270 37 100.0 35 ..................................... TCAAATTCTACGGGGTAAGTTTCCTCAGTTTCATC 45342 37 100.0 35 ..................................... GAATTTCTCCAGCACGATCTAGAACTGGCACAACT 45414 37 100.0 35 ..................................... ACCTGCCCACAGGAATCAGCCGTTCTGGTAACAGC 45486 37 100.0 38 ..................................... CTCACATACCTAGCTCTAATAGTTTGACCTCCATACTG 45561 37 100.0 43 ..................................... TGAATTGATCGATCACCTAGAAGTCGGCAAGGGAGTCGTCATC 45641 37 100.0 34 ..................................... ACCGCGCTGCCTTGATTCGTTCGGTTTGGCGCTC 45712 37 100.0 33 ..................................... TTATCTTCGTTCTTAATAGGAGAAAAATCGATG 45782 37 100.0 35 ..................................... AAGAGGCAGCAAAAAGCCCCGACCGGAGCCGAGGC 45854 37 100.0 35 ..................................... AACAAAGACCTGAAGAACCCAAGAGCATCGTTTTT 45926 37 100.0 35 ..................................... TTACCGCCGGTTATGTGAGCTTCTGGGAAACTCGA 45998 37 100.0 33 ..................................... TGATATCTCCATCCTCAATGCTGCATTTGAGGA 46068 37 100.0 36 ..................................... AGACTCAACCGACTTGTTATAAAACAACACCTCCTT 46141 37 100.0 36 ..................................... TAACGCCCGAATCAGCTCACAGAGAAAGTAAACAGC 46214 37 100.0 33 ..................................... TGCGGTCTCATCGGCTTTATCAAAATATATAAA 46284 37 100.0 34 ..................................... GTTTGCCTCAACTTTCCGGGGCAATTGTCCAGCG 46355 37 100.0 33 ..................................... GAGAGGGATAAAAGCCGAGAGGCTAAGTTCAAG 46425 37 100.0 32 ..................................... GTTGGGGCGATCGCATTAAATCTCCGCCAACC 46494 37 100.0 35 ..................................... CAGTACAGCCAGCGACCGCGATATCCGCGTTCGCC 46566 37 100.0 43 ..................................... AAATATTAGTGAACCACTACCTTTTAGCTTAATAGCTGCACTT 46646 37 100.0 34 ..................................... TATGCATTCGGATGCTATACTGATGATACTGCTG 46717 37 97.3 41 ...................T................. TTGAAACAAAGTAAATTGCAATCCCAAGTCTCTGCTGAAGC 46795 37 100.0 35 ..................................... TTGAAACCGCAATTGAAGGAATCCAACTCTATGTC 46867 37 100.0 32 ..................................... ATGGGATACCACTGGCTAGGCCACATTATCGA 46936 37 100.0 38 ..................................... GCGGCGCTGGGGGCTGGGGTTCTGGCAGCGGAGGCGGC 47011 37 100.0 39 ..................................... ACAAGAATTTACAACTCTAATAGGAGTCAATGATTTCAA 47087 37 100.0 35 ..................................... CGGACAATCGCTCATACCAAAAAATCGTGCAACGC 47159 37 100.0 34 ..................................... GGCCGGAAGAATGCCTTCGACAACAAGGGCTGTG 47230 37 100.0 33 ..................................... TTCTCCTTTTATCTTCGGCGGGTGCGATCGCAC 47300 37 100.0 34 ..................................... ACGCTTGGGCGATCGCTTTATAAAAACTACCGAA 47371 37 100.0 38 ..................................... GAGGCGATCGCAACCGTTGCCATTGAAGAGGGCGAATT 47446 37 100.0 34 ..................................... ACATCGCCGGGAAATTTAGGTCAGGCAGAGAAAT 47517 37 100.0 35 ..................................... ATTTTGAAGAGTTCGTTCATGTTTATTAAATATTG 47589 37 100.0 33 ..................................... ATGCAGCAGCGAGAACTCAGACAGCTTGACCTC 47659 37 100.0 32 ..................................... CCTAGGATTCCAGCCTGCCACTGGATTTATGA 47728 37 100.0 41 ..................................... TCGCTAGATTCCCTCGCGATTCCAACAACTGACGGGACAGG 47806 37 100.0 37 ..................................... ACTGTGCAATCCCATAAAGGTAAATCCTTTTATGCCG 47880 37 100.0 35 ..................................... GTATTTTGCCGACTACTTTGATGATCTGTTACAGA 47952 37 100.0 36 ..................................... TGGCTTAGATCGCTTGACGGCTTGTTGGATGCTCTG 48025 37 97.3 35 ....................................A GGGGTAGTTCATAGCAGTTTGTTCTGGGAGCTAAT 48097 37 91.9 0 .............T.........A............G | ========== ====== ====== ====== ===================================== =========================================== ================== 95 37 99.9 36 ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTTGGGCAAGTATGGGCCAGGAGTCGGAAGCTGATAACCGCATTCCCCTATTTCAACCCTATCAACTCAATACGGAGTTATTAGGCCATGCGGACAAAGATGCGATCGTTCTCCATTGTCTCCCAGCCCATCGCGGCGAGGAAATTACCCATGAGGTGATGGAGGGTTCGCACTCGCGCATTTGGGATCAAGCAGAAAACCGGATGCACGCTCAAAAGGCTTTGCTGGCAAGTTTGCTAGGCTGCGACTAGGCGCGTTTCTTCTGGGCGTTGCGCGAGGGGTTGGGTGTGGATTTTCTAAGGTTGCTAAATATCGCTGGAAGGCTGATGGCTGACAGGTTTGGGGGCATTTGCAAATCATGAAGGCTCGCGCACCTTATCTATCAAGCTTTTCAGCGATTTGCTCTTGTGTTCCCTTGGGTTCTATGCTACCTTTAGGTCAGCCTCGCGCAAGCGTACCTGGAAAACTAAATATACCAAGGGTTCTGGTCGCCCGCG # Right flank : GCTGTAATTGAGCGAAAATAGATAAATCGAATTGCCGAGAGAAGAGAACGAGGACAAATCGAAACCATGTACAAATTTTACTTACCAAACCTGGGCGTCACAGTTTCGCTAGAGGTTGAAGACCCCAATGCTAGTGCGGAGATGAAATTTGAGGGAGAGAAACCGCAAGTTCGGCTAACCCGCGCCGAACTACATGGAGCGTATGGAGCCTTTGGTCATACCATTGATACATGGGCAACCCCCATTGACCTTCATTGTGCATTAGTGACCGCAGCCCAGAGCGATCGCAGATTTGAATTTGAGATGACTGAAGGCCAAATTGATAGCTACGATCCGGGCATCCCACCCGATGCAATCACCTAACAGCAATATAGCGTTACCTTCCACCCTCGCCATCCCTAATTTTAGGAATTGGGTTGCAGGCGATCGCACTTCCACTGCCCATACCCCTTGTAATAAAACTGTAAAGATTCCATAAACCAGGCATAAAACTTAATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 33230-34934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQZ010000015.1 Desertifilum sp. FACHB-1129 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 33230 37 97.3 34 ....................................T ATTTTTGCGATGACTGTGGCGCTGAATACGAAGG 33301 37 100.0 45 ..................................... TTGACAGTCACGTCGTCCCGGTGCGGGTCGCCCCAAGGAAAAAAA 33383 37 100.0 38 ..................................... TTGACAGTCACAGTGACTTCAATGAAACGCCTCCTAGT 33458 37 100.0 42 ..................................... TTGCAGATGTCCCGGTAGGTGAGCCGATTCCGGGGCGGACCC 33537 37 100.0 40 ..................................... GCTGCCAGTGGCCCTGGCAAAATTTTTCAACCTATTGGAG 33614 37 100.0 33 ..................................... GCTCCTGAGAAGAAGAATAAAATAGATTGCTAT 33684 37 100.0 36 ..................................... TGAATTAGTGGCCGCCGCCGATTTATTCAACCAATC 33757 37 100.0 35 ..................................... GATGGACCTTTTAGCCTTCCCTACGAGGTTTCTAG 33829 37 100.0 34 ..................................... CTCGTTCTGCTGCGGCGGCCTCAGCCCTCGGCTC 33900 37 100.0 34 ..................................... TGTTGCCAGCATCCCTCCTGTGAGGAATCGGGCT 33971 37 100.0 34 ..................................... CTTTTGTGGAGACCCACTGCGGTTTAGTCATAAT 34042 37 100.0 35 ..................................... TTGTGTTGCATGAATCCAGAATGCCCAGTAAGAGT 34114 37 100.0 33 ..................................... GCGGTATACCTGCCAGGGAGTGCGCCGCCCCTT 34184 37 100.0 34 ..................................... GGAACGCTATCGAAGAGTTCTGTCATATTTGCAA 34255 37 100.0 37 ..................................... ACGAAAAATTCATAGCAAGATTTTAATTAATGGACTT 34329 37 100.0 36 ..................................... TCACAAACTCGCCTCGATGAGCGATCGCGTAAACTG 34402 37 100.0 34 ..................................... AATTGGAAATTTCTGAGGATTCCATTATAGAAAT 34473 37 100.0 37 ..................................... ACAACCGAAAACCACGATTCTCTGAACAGACAATCGG 34547 37 100.0 34 ..................................... GCAAGAGGATATCGCTCACTCACTGCGCCAAACT 34618 37 97.3 34 ....................................T GAGTTGGGCGGCATAGGGGCGCGGATCGGCTTGA 34689 37 97.3 34 ....................................T TTGGAGTGCATCCGGGCTGCACTTCTGATCGAGC 34760 37 97.3 33 ....................................T TCCTTTTGAAAAAATGGCAGGTGCATCTGCCCC 34830 37 100.0 31 ..................................... GTACTACACTCACAAGGTGTAGCCCATTGAA 34898 37 91.9 0 .CAT................................. | ========== ====== ====== ====== ===================================== ============================================= ================== 24 37 99.2 36 GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Left flank : GCAGTTGGGTTTTCCCCAAGAGGCGATAGAGAAGGTGGAGGAACTTTCGGACGAACAGGGGCGAAAGTTAAGTCAGTTTGATGCGTTCCAATTTCAACGGCGTCGCACTCAAGGACAAGGTTCTAAAAGTTCGGATCGGGGATACTGGTTTCGGTTAACTTTTAAAGAACCCCAAAAAGGACCGATTGCTTTGGGCTATGCGGCTCATTTTGGTTTAGGGACGTTTATCCCAATCCGATAAATCGCTCTTGCTGCGCGGAGGGGTGGGTGTAGAATGAATGCTGCTCGACAATATGCCCCAAACCCTGGAATAATAAGGCTGTGGGCGATTTTACAGAAATTTTGCCTCGCGCAAATGCCAAAATGCTTATCTGATAAGCGTTTCGTCGTTTCTGTATTTTCTATTTTCGGGCGATTATTTCCCAAAATGGACTTCTCCCCCCCTCGCCGCGCAACCGTACCTGGAAAACTCCATATCATCAGGCTTTCAGGTTGCCGCA # Right flank : CAAGCAAGCAAGGAAGCCAGGAGCGAACCCCCTAGATAGAGATATCCTAAAAAAGGCAGAGGTCAAACTTTGCCTTTTTCCGTTTGGGGATAGACTTGTGCAACCCGTAGACTTTACCACCCTCACCGCCGTTTACACAGACTTGCAGGCGAACTGGCTGCCCGCCCGTCTCGAACAAGTTTATCAGCGCGATCGCCATACCATCTGCCTTGCCCTGCGAACCTTTAAACAGCGCGGCTGGCTGACCATTTCGCGCCATCCCCAAGCCGCCCATCTGTGCATCGGCGATCCGCCCCCCAAAGCGCCCGACACCTTCACCTTTAGCGATCAACTGCGCCACCAACTCAACGGGTTAGCCCTGGTTGCCATTACCCCCGTTGCTCCGTGGGAACGCGCCCTAGACCTGCAATTTGCCAAACGCCCCGGAGACGCCATCCTCTGGCATTTGTACGTTGAAATTATGGGCAAATATAGTAATATCATCTTGGCAAATGCCGATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //