Array 1 5379-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQY01000032.1 Limosilactobacillus fermentum strain CECT 9269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 5378 29 100.0 32 ............................. CGTGGCTTTAGACGTGGAATCCGGTAATCCAG 5317 29 100.0 32 ............................. CTTACGAATTGTTCGGTCATAATCCACACCAT 5256 29 96.6 32 ............................C TACTTGCCGAAGGTGGGAGTTGAATGGTTTAA 5195 29 96.6 32 ............................C AAGCGCTAACTCGTCACGATCGTTAGCTGACG 5134 29 100.0 32 ............................. TGAAGCCCCATTTGTCGATTTCGTCTTTGAAG 5073 29 100.0 32 ............................. GACGTCACTTGCGCTTGGTCATAGATAAACGA 5012 29 100.0 32 ............................. GACGCAATTAAAAATTCGCAAGTCAATAGCCA 4951 29 96.6 32 ............................C CGCTAAAAATAGATAGCCAACCGCCGATCCAT 4890 29 96.6 32 ............................C ATGACCGGGTCTAAATGGTAAAAATTACACAT 4829 29 100.0 32 ............................. CGTGCGGGCTAATGGGAAGGTTGAAATCCCGA 4768 29 100.0 32 ............................. GCAAGTGGCCAGGCGGCCAGTGCCGTGCTCAC 4707 29 100.0 32 ............................. CCTGACTGCCTCCTTTTTCTCCGGCACGTTAC 4646 29 100.0 32 ............................. CAGTGACGTGTAGCGCTTGGTTTTGCCCTCTG 4585 29 100.0 32 ............................. AAAACCGATAATGGCGTTCCATCCTGATTTCG 4524 29 96.6 32 ............................C CTCTGCAAAAATCGAAGGACGATCAGCCCAAC 4463 29 96.6 32 ............................C TGGGTCCTGATACGCAATTCCGCCGGATCGTC 4402 29 100.0 33 ............................. CACTTCTTACTGTGGCTATTGTTCCGTCGGTTA 4340 29 100.0 32 ............................. TACCAACCAACTCAAAGCCTTACAGGAACAGG 4279 29 96.6 32 ............................C GCTTGGTGATGGTGCTAAGGGCGTACATCCGA 4218 29 100.0 32 ............................. TAACGCCAAAGCCCATTAGGCTGTGATCCTTT 4157 29 100.0 32 ............................. GATACACCCGCCGGCTTTAATAGTCAACACTT 4096 29 100.0 40 ............................. ATATCAGATGAACAGGTTAATATGATTATTAATTCTCGGG 4027 29 100.0 32 ............................. GGTACCATCTTATGGGGTACGTATTATTGATA 3966 29 100.0 32 ............................. CTTTACCAAACGCTTAGTGCTAACAATCGAGC 3905 29 96.6 32 ............................C GTCTTAGGGGATGCACGCGATCTATTAGAAGG 3844 29 96.6 32 ............................C GTCAGCCTGGAACTTAGGCTCTTACTCCGTGC 3783 29 96.6 32 ............................A AACCTTATCCGAGTAAGGCTCCCGATTGTCAA 3722 29 96.6 32 ............................C AGCTAAAACTTATCAATCAATATAAAGAAAAC 3661 29 96.6 33 ............................C AGGGCGGTTGATAGGAGGTAAAACATGGCGTTA 3599 29 100.0 32 ............................. ACATCCGGGCCTTTAAAATTGGCCGCTTCCTC 3538 29 100.0 32 ............................. TTGAACAACAACAAACTAGACAAAGCCAGTTA 3477 29 96.6 32 ............................C AGGACGCACCGGCGATCTACGCATCGTTTATG 3416 29 96.6 32 ............................C TGACGGGGCTTCGGTTGATGCACAGACTCAAC 3355 29 100.0 32 ............................. AATATGCTTATACGTGTTGCTGTATCGAAAGT 3294 29 100.0 32 ............................. ACGTTCGCTAATGACACCGTAGACTTGCCTAG 3233 29 96.6 32 ............................C TAAAAACGATTCTAGGCCCGCTTCACAAGACA 3172 29 96.6 32 ............................C TATGACGTGGCCTTGATGGGCTATGGGATCAA 3111 29 96.6 32 ............................A ATCAAGTATTGCCCGTTTTGTGGGAGGAAGCT 3050 29 96.6 32 ............................C TACCATAGATCTTAATTTGGTTATCATCGATT 2989 29 96.6 32 ............................C GTCACAATTGAAGTCAATTTAAGTACAAACAA 2928 29 96.6 32 ............................C CGTAAGACGTTGTCATAAGACAGGTCGATAGG 2867 29 96.6 32 ............................C AGGCTTTTCTTGGCAAGCTCGGCCCATTGCTG 2806 29 100.0 32 ............................. CGTTGGGGCCGGCAAGATGTACACGGGTGACT 2745 29 100.0 32 ............................. CGTTGGGGCCGGCAAGATGTACACGGGTGACT 2684 29 96.6 32 ............................C AGATATTGAGGTAGACTAAATGAGTGAAGCAA 2623 29 96.6 32 ............................C TTGTCCCAATGTAGCTTGCCCTGCTCTTCAAT 2562 29 96.6 32 ............................C ACAATTGCCTTAAACAAACGGGCGCACACCTA 2501 29 100.0 32 ............................. GGCATATCGAATGAACAGTTATATGCAAAAGA 2440 29 100.0 32 ............................. AAAGATGAAAACACGCTAGAACACTTGCTTGA 2379 29 100.0 32 ............................. ATAAATGACCTAGGATAGTCATATATGGCGCA 2318 29 96.6 32 ............................C GATGCCTGCATCTCTGCAAAAAGTCGCTAAGT 2257 29 100.0 32 ............................. AACGGGGTTCATCAAGCATATATTTTAATTGA 2196 29 96.6 32 ............................C ACTGTCACCAAAACGCTTAGTAAGCTAGGCGG 2135 29 96.6 32 ............................C ATTTGTTGAAGTTTGGTCTTGTCTGAATAAAG 2074 29 100.0 32 ............................. TAAACAGACTAGCCAAGAGGTTAATAAACCAG 2013 29 100.0 32 ............................. TTCATAGTCAACGTTAGTAATTGTAGTTACCA 1952 29 96.6 32 ............................C TTGGGGTTATTAAAGGCGAAGTAAAAGTTATT 1891 29 96.6 32 ............................C CGGGCACAGACACTTGGTGACGGCCAAATTCA 1830 29 96.6 32 ............................C TTCACACTGAAATGTTTCGTCATTAAACATAA 1769 29 100.0 32 ............................. TCAGCACTATAAATCAAGTCGTTATCTTCGTC 1708 29 100.0 32 ............................. TACTTTTCGTTCATCGGTTGCAAATACTTTCT 1647 29 100.0 32 ............................. ATGTCAACGCTTCAGTACGGATCAACCAATCT 1586 29 96.6 32 ...........................T. GAGGGCCTTGGCGACGTCCGTCGTCGAGTGCT 1525 29 100.0 32 ............................. TATCAAGGCTAAGCGTTACACTATCACGTTTG 1464 29 100.0 33 ............................. GGTGGTATCGTATCGACTGATGTCTCCAAGACG 1402 29 96.6 32 ............................C TATAAACGTCAATCGAACCGGGTTTCATTTCT 1341 29 96.6 32 ............................C GCTCGTGTCGGTCTTGCCGACGCTAGCTAAGG 1280 29 96.6 32 ............................C TTGGATTGTGAAATCCAAGATATAGTTAAGTG 1219 29 100.0 32 ............................. CTCCTTGTGTATAGTTTTGTCTAGAGCTTAGT 1158 29 96.6 32 ............................C CCTTACGATCGCTACTACGAATAGGAGAGAGA 1097 29 100.0 32 ............................. TATTAATAACCCGGCGTTGGGGTTAAATCAAA 1036 29 96.6 32 ............................C GGCGTTAACTTCGCTGGAATCTACGGTGGGAC 975 29 96.6 32 ............................C TTGTGTTCCATCGTCACGACCCTTACCATCAG 914 29 96.6 32 ............................C GTCTACTACACGTTACTAGAATTCCATCAATG 853 29 96.6 32 ............................C GTTACTGATTTAGCCGAGAAAGAAATCAAAAC 792 29 100.0 32 ............................. CTGTTCAGTGGTGAAGGATAACTTTACGTCAA 731 29 100.0 32 ............................. CGCATACTCTTCGATAGCAAATTGCCAAACGT 670 29 96.6 32 ............................C GCAGGCGGCAAAGCACGTTTCACGACGACCGA 609 29 100.0 32 ............................. GGACACAACTATACCCAAGATGATATTAAATG 548 29 100.0 32 ............................. AACACCATCGGTTTAGCAACCAATAACAACAT 487 29 100.0 32 ............................. CTTCCTTTCTATCCAAATGTTTCTACTTGGAT 426 29 100.0 32 ............................. GATACGAATAGTCCTTCTCGGGCAAGTTCATG 365 29 96.6 32 ............................C CGCAGACAAAGTGGCACTGAAGCCGTTCTTAA 304 29 96.6 32 ............................A GAGTGATACTAAATGAACCAATTAACCGACAA 243 29 100.0 32 ............................. GTAATTATTTCCATCTGACACCTTGGCAGTCC 182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 86 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TACATGGGCTTTAGTCGTACGAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17356-18711 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQY01000039.1 Limosilactobacillus fermentum strain CECT 9269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17356 36 100.0 30 .................................... CTGACGTATATTCCCAGACCCATGAAATGT 17422 36 100.0 30 .................................... GACTATCACTGACGTACTCACCTAACAATT 17488 36 100.0 30 .................................... CAACGTTCTCCGGTAATGAAACGACGATCA 17554 36 100.0 30 .................................... ATAAACATACAATTTAGTGGGGTGAATGTT 17620 36 100.0 30 .................................... ACTTAATTATTAGGAGGAACGCTTATTATG 17686 36 100.0 30 .................................... ACTCCCACAAGGGCGTAACTATCGTCACCA 17752 36 100.0 30 .................................... AACAACGCCAGGTTGGCAACTATATCGTCA 17818 36 100.0 30 .................................... ACATACTGCGGATCATAAGGATTGGCTGCT 17884 36 100.0 30 .................................... TCACTGAAGAATTAACACAGTCGATTGCTT 17950 36 100.0 30 .................................... CGATCTCACCAAAGATTGATGGCGTCACGC 18016 36 100.0 30 .................................... TGCTTCACACCGTTAATGATCCATTTTCCA 18082 36 100.0 30 .................................... GCAGGCCAATCGATTTAAGAGTGTCAGCGT 18148 36 100.0 30 .................................... TCGTTCTTGAGTGAGTCGGAAGCCTCCCAC 18214 36 100.0 30 .................................... ATGATAGCATGACCACCACTAATACAACAG 18280 36 100.0 30 .................................... TGTATGATCTGGAGTTGACCCATCAAATAA 18346 36 100.0 30 .................................... CACACGATCACCAACTAACACCCTACCGCC 18412 36 100.0 30 .................................... TTTACTTGATTGAGGACGTTTTTAATGCTT 18478 36 100.0 30 .................................... AGGTTGTCATTATAAAAATCTACCATAAGA 18544 36 100.0 30 .................................... ATCTCACCATTCTGTTGATACTTACATACG 18610 36 100.0 30 .................................... ATGGTCAAATTGGGATGTTCCCGGCCACTC 18676 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TTCAATGCTTTGCTTGAGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACTTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAAGTTGAATTAAATTTAGAGGATGACGAATTAAAGGAGCTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCCGAGATCCTTGATGAAATTCTTAAGTCCGAAGCGACTGAGCAGATTAAAGCTAAGGCTTATGAACGTTCGGATGAGCGAACCAATTCACGGAATGGTTATCGGGTTCGTCAGCTTACCACCCGCGTAGGGTCTCTAGAACTACACGTTCCTAAACTCCGTCATGGCAATTTTTCAACACAGCTGTTCAAACGCTACCAGCGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 18320-19860 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQY01000017.1 Limosilactobacillus fermentum strain CECT 9269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 18320 36 100.0 37 .................................... GAAATTAGATTGCATGATTGAAACTCCTTTTCTTTGA 18393 36 100.0 37 .................................... TGATTGAACAAGCAAAGTAAGTGCGGATCAACCTTCT 18466 36 100.0 37 .................................... ATGAATGGCTTGATAATTTGGCCCTTCCCTTGCATCG 18539 36 100.0 37 .................................... TGGAATGTGGTAGAAATTGGCAATCTCCTTCATCTGA 18612 36 100.0 36 .................................... TCATGAATAGCGCTATACAAACCGGGCAACATTAGC 18684 36 100.0 33 .................................... AGCACCTGCTTACGATACCAAATCTTAGTTGGC 18753 36 100.0 36 .................................... TAGTCGTATAAATGCTAGTGCTATTGATAGCAATTA 18825 36 100.0 35 .................................... TGTATCACCTAAAATGGCTTCAATCTGTTCTTCAA 18896 36 100.0 35 .................................... TGCATGACCGCCTACATATTTCATTTTAATTTCCT 18967 36 100.0 35 .................................... TTACTTCCTTTTCGCCTGGTGTATAAACAAAGTTA 19038 36 100.0 35 .................................... TCTCTGCACTGTAGAAAGACAAATCAAAGAAAAGA 19109 36 100.0 36 .................................... AATAACATGATGGAAAACAAGTAAATTAAAATAGGC 19181 36 100.0 34 .................................... TGTTCCACCTAGCTGTTCTTAGTTTTTCTGGATC 19251 36 100.0 34 .................................... TTTGTCTTCAAGTACATTGCCATGTGGGTTGCCG 19321 36 100.0 37 .................................... AACGACTACCAGGATGGTAAGGAAATGATTCAAAAGT 19394 36 100.0 34 .................................... TTTCTAAGATCTTTTTGTAAGCACTAATCATTTT 19464 36 100.0 36 .................................... TAAATCATAGTCGCTTGTATTATGGCTTAATTCTTC 19536 36 100.0 35 .................................... AGGTCGTCCCTTGCCTCCTTAACACTACTACTAAT 19607 36 100.0 36 .................................... AATAAGTGGGCGTATGGTTGTAAGTTACTTAATACA 19679 36 100.0 39 .................................... ATTCTTGATTGTTTGGTTCATTTTGTTTACCCCTTTTCT 19754 36 100.0 35 .................................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 19825 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 98.7 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCGGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTAATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTTATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATGTAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTATGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGTATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGAGCGAGTGATTGAATATTGCATTCTCAATCACATTGGAATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //