Array 1 2-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLA010000115.1 Veillonella magna strain An537 An537_contig-110_114, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 2 28 100.0 38 ............................ GCGGCTCCATCGCTACCGGCACTAACTCGCTTGCCATC 68 28 100.0 38 ............................ GGAGCATTACTGAGATATGTACTCCTTGCGTAATTCTA 134 28 100.0 39 ............................ GCCAATACGATCAAGCTCAATCAGTGGGTTAAAGCCAAA 201 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 100.0 39 TTTAAATTCTACTGTAGTAACAACTGAA # Left flank : AT # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATTCTACTGTAGTAACAACTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 14-374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLA010000087.1 Veillonella magna strain An537 An537_contig-110_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 37 .............................. CCAATACGATCAAGCTCAATCAGTGGGTTAAAGCCAA 81 30 100.0 36 .............................. ATCCAGAGTGACAGTTCGAATTGAGTATACATTTTT 147 30 96.7 36 ..........C................... TTCTTCTTTGGTGAAGTCTGCTTTCATGATGTCCCA 213 30 100.0 36 .............................. CCGATGCCGTTAGCCACGTTTCCTCGTTCATCATCT 279 30 100.0 36 .............................. CGGCTCCATCGCTACCGGCACTAACTCGCTTGCCAT 345 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 36 ATTTAAATTCTACTGTAGTAACAACTGAAG # Left flank : CTTGCGTAATTCTA # Right flank : GAGCATTACTGAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCTACTGTAGTAACAACTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 61433-61661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLA010000011.1 Veillonella magna strain An537 An537_contig-110_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 61433 30 100.0 36 .............................. AACAAGTTGTTCTTCCCATCTGAATTACCTCACATA 61499 30 100.0 37 .............................. CCGATGGCAGCGGCTCCCGTAGCACCGAAGGTTAATT 61566 30 100.0 36 .............................. TATTTGTCACTCCGGCGGCTAAGAAGAATTTCCACA 61632 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 CTTTAAATTCTACTGTAGTAACAACTGAAG # Left flank : CAAGACGAGGTCATCGTCTCTCTGTTAGAGCGCAAAACACGAGCGTACGTAACACTTAGGTCTCCTTCAGCTAAGGCAACCGATATTGCGATTACCTTACAAAATTAGTTGAAACGCTGCAATGAAGCCTTAGATGGCAAGGCGTTATGTAAAACGATAACATCAGATGATGGACTGGAGTTTTCCTCTATCACTGATTTAGAGAGCGATACACTTCAAATCTTTTTTGCTCATCCCTATGCCGCATAGGAGCGTGGCTCTAATGAAAGACACAACGGATTATTACGTCGTTTTATTCCTAAAGGTACACCTATTCACACAGTATCTGAAGCAACTTTTAAACGAGCAACAGATTGGTGTAATACGTTACCTAGAAAAATTCTCGGTTACCGTACACCGCAAGAGGCATTCCTTGACGAATTAAAAAGCTAACGGATGTAACGAGTGTTCAATTTCATATTGCAATTTAGAATTTTTTTTTCATCAAATTCAAATTTAAT # Right flank : GCCTAACACTCATACCGCAATGGCGGTGCAGATAAAAACAAGCATTTCTGTCGGACTGCCACTACTGAGTATTCTGTTGAAATAATTATGCTATAAATTTTTCATATTTACAAGTCATTGAGCCATTGTCGATAGAAGGGAAAATAGATTATACCAAGGGTCGACAGAGATTGTTTAGTGAGGCTGTGTCTGAATGATACTACTTGGTGTGTATTCTAAGTGATGACAGTGTAGGCGCTTGATGACTATGATATACTGAGATTGGTAATAGCTAGTAGAAAATTACATAATAAAAAAGGCCTTTACCGATATACTAGGTATGCATGAAAAAATAGCAGCAAAAGTATGGGATACAAATCATATGATAAGAATGTAGGAAAATGGCTTTCTAAGACTGTAGGCTTTTGGCTGATTCATGTATATTTTCACCGATGATATTCGTTCCATGGGTTGAACGTAATAGTGAACTTTTGGCTGATTCATGTATGCTTTCACCGAGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATTCTACTGTAGTAACAACTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 71290-71062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLA010000011.1 Veillonella magna strain An537 An537_contig-110_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 71289 29 100.0 37 ............................. GATGGCAAGCGAGTTAGTGCCGGTAGCGATGGAGCCG 71223 29 100.0 37 ............................. TTATTCATCTTAGGAACAACAGTGACCTCTCCACCTT 71157 29 100.0 38 ............................. TCTGTTAGCAGCATCAAGTATATTGGCTGTTAATTCTT 71090 29 89.7 0 ......................C..C.G. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 CTTCAGTTGTTACTACAGTAGAATTTAAA # Left flank : CTCAGTAATGCT # Right flank : TGACAAAATATTCTACACTTTTCCTTCTTCTTATGAAGCAATGGACTGCATCCCTGCCATTAGTCATCGCCTCCTGCTCTATGATAGGTAAAAGTGTGACGCGGTGCCGGTTTCCTTTCCACTGTTGTTAACCCGACTCCTGCCACGTGGTAATAGAAGCGTCTGGCGCAGCCTGTTCTTCTGTTGGTTGTGGATTCTCCCGTTCCGCTGTAATTTGTGGAGCCGTCTCTGTTATCATTGCCGTTAGCATATCCCGTAGTACGAGAGCCATCCCTTTGTGAACGAGAACCGTACCCTTGTGAGCGATAGGCCCCCCGCCGTTCCTTCGCTTCCGCTTTCCACTTCTTTTCATTTCGTTCCCAGTAAGCAGCCGCTCGTTTCCAACTCTTCATCGTCTTCTTGCCCACAGACCAACCTACCGCATCGTAGTACGCCATGAACGCTTCCGGATCAATGTGGTAGCCCTTCTCTTTACAATACGCCTGCACCATCTCCAGCGT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAGTTGTTACTACAGTAGAATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 12060-14992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLA010000031.1 Veillonella magna strain An537 An537_contig-110_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12060 30 100.0 36 .............................. ATCGATGGCGGCTTGGTTTCCGTCTTTCTCGTTGAG 12126 30 100.0 36 .............................. ATTAATTTCGTCACCCATATCGCTTTTGTCAAATGC 12192 30 100.0 36 .............................. ATTGAAAAAAGGCTTTATGCTCCTTGTTAGAAATCG 12258 30 100.0 36 .............................. AGCGGCTAGCGTAGCGGCCACATACGTGAGGATTTT 12324 30 100.0 36 .............................. TAGTTCATTACTCCTTTCCGATATTCGCCAATTCAT 12390 30 100.0 36 .............................. GACTTAGAAATTTCATACAAAGCCTCGTCGATAAGG 12456 30 100.0 36 .............................. TATTTTGTAACAATAGCGGTTAACAGCTTATTCAGC 12522 30 100.0 36 .............................. GCGTGTCATGATAATAATGATTTTGCCACCTTCCTC 12588 30 100.0 36 .............................. TTAACTCCTGAGCAAATCGAAGCGGCGCGGGTGGCA 12654 30 100.0 36 .............................. GTTAATTGTGTTATATTAAATGTGCCGTGAAAATGC 12720 30 100.0 36 .............................. TCGCCTTGTCTGACGGGCCCCCTCATGGGGGCGGTG 12786 30 100.0 35 .............................. ATTGAATTTAAAATACTTTTTCAACGTGTCTAACT 12851 30 100.0 35 .............................. AAAGGCTAACCGGATAATATACTTTACATTGCCTC 12916 30 100.0 36 .............................. GCTGCTGTTACCGAAGATGACATTATCGGCGGTGTA 12982 30 100.0 36 .............................. TTTTCCGGCTTGATTTCTATTTCCCACATTCTCGAA 13048 30 100.0 35 .............................. AAAAGATAGGCGTCAGCTCTTCTACTTTGTCAGAA 13113 30 100.0 36 .............................. GCGAATGCAGACACGTCTATTTTTTATAACTGGGCT 13179 30 100.0 36 .............................. TGATTAGCCGCCTCGTTGACTGGGTACTATCTCTAA 13245 30 100.0 36 .............................. CATCCAACAGGGAATTTGTTGCAACTATCATGAATA 13311 30 100.0 37 .............................. TCAAGTGATTTTCCATTCTGTGCGCCCGCCTGCTGGA 13378 30 100.0 35 .............................. GTGAACTGGAGGCGGGAATATGAAAGAGACTAATG 13443 30 100.0 36 .............................. GGATTACTACTTGAAGTTAGAATTATTGCATCTGCG 13509 30 100.0 37 .............................. GTGTAGCTTATTTTGAACAGTAGCATAAAAGTGTTGT 13576 30 100.0 36 .............................. ATGATTCAATTATAAGGCGTTTCAGTCTAATATGCC 13642 30 96.7 36 ......C....................... CTGTTTCCTGCGCCTACTCATACATCACGCGGAACG 13708 30 100.0 34 .............................. CGCAATAACAAAAAAGCTATCGAAGGCGTTGCTA 13772 30 100.0 36 .............................. CGCAAGGTCCGTCAAATAGTTTCTAACGGGGTGGAA 13838 30 100.0 37 .............................. ACTATAGACTATTATACTTACTTTTTTTAAAGCTACT 13905 30 100.0 37 .............................. TGGCACATTGCTGGTGATTTACAACGTTTTAAGCGAC 13972 30 100.0 36 .............................. AGACTGAAAAACGATATGAATTAAACATCGTATTAC 14038 30 100.0 37 .............................. ATGGGCAGTACCTTGAACTTGGGCGCAATGTCAGCGT 14105 30 100.0 36 .............................. AATGATGGAGGAACCGGAAACAATGAAGGCGTTGTT 14171 30 96.7 36 ...............A.............. GTTGTGGGTGGTCCTTTTTGAACTTCTTGGTGTCGA 14237 30 96.7 36 ...............A.............. ACAGAGAAACAGCTCAATGCTCTTGCGCAGGTTATC 14303 30 96.7 36 ...............A.............. CAATATTCGCAGACTATAAGATAATGCGCATCAATC 14369 30 96.7 36 ...............A.............. TAGCCATGACGTTGTCCTTGTGCTTCATGACTTTGA 14435 30 96.7 36 ...............A.............. GAAGTAAATGAATATGTATTTGTTGTATCCCCTGAA 14501 30 100.0 36 .............................. TCAGATAACAACGCCTTCATCAGCAAATCAGGTATT 14567 30 100.0 36 .............................. TGTTATCGCCATCATCTTTCAAGCAGTCGGCGGCAC 14633 30 100.0 36 .............................. GTTGTTGTCCGGCACCTATTCCCACGTAGGGGGTGA 14699 30 100.0 36 .............................. TTGATTTGCTCTTCAAAGAGCTTAAATCGTGCCAGA 14765 30 100.0 36 .............................. ATGAGGAACGGCTTCACTCATGCCTTTTATGATCCA 14831 30 100.0 35 .............................. CGCTATAGTTTGCCTCTACCAATATGTGCGTCAAA 14896 30 96.7 37 T............................. TTGGCTTTAACCCACTGATTGAGCTTGATCGTATTGG 14963 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.5 36 CTTCAGTTGTTACTACAGTAGAATTTAAAT # Left flank : TAGCTATTTTATCCTGCTTCAGTTGTTACTACAGTAGAATTTAAAATTTTTTTGACAAGAGCATTCGGAAAACCGAAAACGACTTCAGTTGTTACTATAGTAAAGTTCAAATTATATTTGACTTGATGTGCTTTACCCTGTTACAAACTCCTATCGTCACTTTTTATACATACCTGGTATATCATAAAAAAATCTCTTTTATTATGCAATTTTCTACCAGCTATTACCAGTCCCAGTATATCACATGCATCTGATTATATATAGCATCTTTGCCTTCATCACTTGGAGTACACACCAAGTAGTATCATTCAGACACAGCCTCACTAAACAATCTCTGTCGACCCTTAGTATGATCTATTTTCCCTTCTATCGACAATGGCTCAAAGACTTGTAAATATGAAAAATTTATAGCATAATTATTTCATCAGAATACTTAAGAGTAGCAGTCCGACAGAAATGCTTATTTTTATCTGCACTGCCACTGCAATGTGAGTGGTAGA # Right flank : AGAATTACGCAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAGTTGTTACTACAGTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //