Array 1 107616-106139 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS20 scaffold1_size486328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107615 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107554 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107492 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107431 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107370 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107309 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107248 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107187 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107126 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107065 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107004 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106943 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106882 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106820 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106717 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106656 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106595 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106534 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106473 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106412 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106351 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106290 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106229 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106168 29 96.6 0 A............................ | A [106141] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125302-123748 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS20 scaffold1_size486328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125301 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125240 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125179 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125118 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125057 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124996 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124935 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124874 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124813 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124752 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124691 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124630 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124569 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124508 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124447 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124386 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124325 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124263 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124202 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124141 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124080 29 93.1 32 A............T............... GGCGATGTGAAGTTCAGGTAGCCCATTACGCA 124019 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123958 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123897 29 96.6 32 .................T........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123836 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123775 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //