Array 1 138988-138030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZY01000014.1 Porphyromonas sp. COT-052 OH4946 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138987 36 100.0 30 .................................... TATTATAAAATTATTTCGGAAAACTTTTCA 138921 36 100.0 30 .................................... AGCATAAGCCTTGGAAAGAACTCGTACACG 138855 36 100.0 30 .................................... GGCCGGTGCCATCATGGCTGTACTCATCGG 138789 36 100.0 30 .................................... CAGAGCGCACTGTTCCTCTGTAGAACCCCT 138723 36 100.0 30 .................................... AGCACAAATGGGAGAACGGCTTCCTGAAGA 138657 36 100.0 30 .................................... CTGAACGGCGATACTTCAGATAATATACCT 138591 36 100.0 28 .................................... AGCCTTGGAGATTATATCTCCGTAGAAG 138527 36 100.0 30 .................................... TTCTCTTCTTATAGTTATATCATTGTTATT 138461 36 100.0 30 .................................... TTTCCCTCTAAATTCGATTTCTCTCATAGT 138395 36 100.0 30 .................................... TGTTGTACGTTATCTTGTAAAGTTATACTT 138329 36 100.0 30 .................................... ATATAGGTGTTTTTGCTGGGATTTTTAGGT 138263 36 100.0 30 .................................... TTTATTAGAAAGGTTTTGTTTAGCTTCGTG 138197 36 100.0 30 .................................... TGGCAATCGGTTGCCCTTTAATTATCTCGT 138131 36 100.0 30 .................................... GGCATGTTGGAAGACGTTAGTCTTATCGTG 138065 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Left flank : GCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCTTGTCCGAACTGACGGACGAATTTTATAAGAATGGCAACGGTGTTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGGATAGCTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGGGCGAACTTTGAACTTTTGAGTGCGAACCGGCAGGAACGTAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCACCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTCTCAAATTCGATGGGGGTAG # Right flank : ATGATTCTTGATTGGTGGCTTGGGCGTTGGAGTGTAGAGGGAGAGAGTAGCGCATGGGGATTCTTCCGTGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTCTTCGGTGAATTTGTGTCGGGGAGTGCTTTCCCTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATGCCGGCATTGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCGCCAAGTTCCTGCACGAACTTGGTGGGTGCCTCTTTATTTATACCTCCGCTAAAGGCTTTTTGAAATGTCCGATTTATATCAAACCGGCTTGTAATCTATATATTTATTGCAATCGATTTATATATAAATCAAAAACGATTTATATACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTTGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 14392-12827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZY01000015.1 Porphyromonas sp. COT-052 OH4946 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 14391 46 100.0 30 .............................................. CAGTGTTATTGTAAATTGATATACTTTTGA 14315 46 100.0 29 .............................................. GGGATGGGGTATGAATATCCAGTATTAGT 14240 46 100.0 30 .............................................. AAGACCAGTATACATGGCTGCCATACGAAT 14164 46 100.0 30 .............................................. AACCATGACAGAATATCTATAGAGAAATAC 14088 46 100.0 30 .............................................. CGGCAATGTTACTGCAAACGGTTGGTGCAG 14012 46 100.0 30 .............................................. AACGAAATGATATTATAACTTGCAACGAGA 13936 46 100.0 30 .............................................. AAGCTTTTGAAATCGTGAATGATAACAGTT 13860 46 100.0 30 .............................................. TCCTTTTGTCCTGTCACTACGATATAATAG 13784 46 100.0 30 .............................................. CGTCAATGCTATTACAAACAGTTGGAGCAG 13708 46 100.0 30 .............................................. ATGCAATGGAATGTTTTACTTGAGGCAAAC 13632 46 100.0 30 .............................................. ACAAAGTTCTCTTACCGACAAATCTATCGG 13556 46 100.0 30 .............................................. GCATACAGTCTTCCGCGAACACGGCGATCT 13480 46 100.0 30 .............................................. TGTCGGGACTTACCGCTTTCGCGACAAAAC 13404 46 100.0 30 .............................................. ATGGCAGAGACCAGATTTGTAATAAACGAC 13328 46 100.0 30 .............................................. ACAGCTGATAAACGCGACTCTTTTTTGACG 13252 46 100.0 30 .............................................. ATCTCCCTCGACGAGTACTATGAGGGTAAC 13176 46 100.0 30 .............................................. ACTAAAAAATGAAAGAAATTATCAAGGAAA 13100 46 100.0 30 .............................................. TAGCGTTGTGGTTTATCGTACAGCGTCATA 13024 46 100.0 30 .............................................. AAAAGGCGGCCAAATGGCTGTGCTCCGACA 12948 46 100.0 30 .............................................. ATATCTATACTGCTATCTTCTACTATTGTT 12872 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 99.9 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGACAGGAAACGTGCAGCAACCTTTCGCAAAAACCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATTAGGCACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCGGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCGCCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : GAAAAAATGGAAAGCACAAAATCCTGAAAATAATAATCTACTCAAAAATCATGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAATAAGCATCTGCGGAGAAAAGAAAAACGAGGCAAAAGTAGCGAGGAAATGGACTTTCACGGACTAAAATACGAATTAAAACAAGCCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATATAAATCGTTTTCAATAAATATATAGATCGTAAGTGATTTATATATAAATCGCAGACCCCAAAAAGCCTTTTCCGAAGTCGGAATAAAAGAAGCACCCGCCGAATTCTACGGAGAACTCCGACGGGTGCAGTCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCAATGTAGCTGCACGATTCCGCTCTGCGATCTCGGATCGGATCGAGGGCTGTCGCTGTACCGAGGTATCCGAATAGGAGCCTATTCGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 44750-44274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZY01000009.1 Porphyromonas sp. COT-052 OH4946 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44749 37 100.0 35 ..................................... CTTTTCGGGTCCTGATGACCGCACCTTCAATTTCA 44677 37 100.0 35 ..................................... AACAGTACCTGAGGTAAACTTTCTTGATAAAAGAT 44605 37 100.0 37 ..................................... TTTAATTATTATGGAAGATGGTTTATACCTCTACTCT 44531 37 100.0 36 ..................................... TTGATAAGTACATTGCCGAGAGAGGGATCAAAATCA 44458 37 100.0 37 ..................................... TGCGATAAGCAGAAAGCATGAGGAAGGATACACTATT 44384 37 100.0 37 ..................................... GAATTTTCAGAAAAAAAGAACAGTATACCTGCAAACT 44310 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AGATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGCGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACATTTTTCGGAGCATCGAAATAGAAAATTACGGTGCGTAAACGGCCTTGGCTCGCACACAAGCGGAAGGCTGTGATTATGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACTTGGAAAGTCCAAGTGATGATGAGTAGAGCATCAAGA # Right flank : AACTTGAGTGACTGCAAGTTACGAATAATCCCAAACGTAACGCACTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAGTTGAGAAATGCAGCTATAACATCATTTTTGCCATTGAGATGCTTATATCTCATTGATATACAATCAGATTAGCTGATTTTCTATTTTCGAAAATCAGAAAGAGGGAGCCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACGCCCCTGTTTTTCGAAAATAAAAGCCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACGGGAGAAAAGAGTCGTTTTTGCAACCGGCTGATAATCAGTACGTCAAAGAGCGATGCGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTCCTCCGGCTCTTGGGTGGGGTCGGATGTCCGCTCATCCAAGCTGCAGCATAACAATGCTGACAGAGAGGAAGAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 134754-141701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZY01000009.1 Porphyromonas sp. COT-052 OH4946 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 134754 30 86.7 36 T........T.C.C................ TGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAGC 134820 30 100.0 35 .............................. CTAACTGATGAGGTGGAAGAGCTGGAGGTTAAGAT 134885 30 100.0 35 .............................. TGCTCAGCAAAAGGCGGACGCTGCTGGCTCTGCCG 134950 30 100.0 37 .............................. TTAGTGGGCAACGATATTTGCCATCATGAGTGCTTTC 135017 30 100.0 34 .............................. GAGGTCAGCCACTTCAACGGGGAGTATATCCCAA 135081 30 100.0 36 .............................. CATTATAATGGGTATAAACAAATAGTTTGTTTTCGC 135147 30 100.0 36 .............................. AGGTACCCAGATTGAGGTTAAAGAAGGGAGCCTCTT 135213 30 100.0 36 .............................. GGTAAAGCGTGTACTGGAGGATCGACCGATGTAGTA 135279 30 100.0 36 .............................. CTCTGTACCTGTATGCTCAGCGACTGAAAAAGGCTT 135345 30 100.0 35 .............................. TAGAACTCCAGCATCTATCAACCTGTCCGCTATAC 135410 30 100.0 37 .............................. TTGCGTATCTCTAATACAGATACAGACATACAATTCT 135477 30 100.0 35 .............................. ATACAGATACAGACGTTCAGTTTTTAGAGTTATCA 135542 30 100.0 41 .............................. CTGCTGGCATTATTATGGTGTCATTCAGCATAGCAGGGTGT 135613 30 100.0 36 .............................. CACCATCTGCCCCCCGTGCGATCCGTCTTTTGCTCT 135679 30 100.0 36 .............................. TCATGCTGACCTACTCACGTGCTTGGGGTTTCCAAG 135745 30 100.0 37 .............................. TCGATTCGCCCCGTGTGAGCGTGAGACAGAGTGGTAT 135812 30 100.0 37 .............................. GGGGATAAGTATGTTGTGTACAACTACGACCCAAGAA 135879 30 100.0 36 .............................. TCTTTATTAATACAGATATTAAACAATATCAAATGT 135945 30 100.0 35 .............................. AGTTATGATCAAGAAATCATCTATGAATTGACAGA 136010 30 100.0 36 .............................. GAGGAAAATATGAAAATAACCAAAGACGGCTTCGTT 136076 30 100.0 36 .............................. CCGTCATTTGATGAAACCACCTTAAATCTGTCAGTA 136142 30 100.0 35 .............................. GCCTCCTTCTTCTCTCCGTTGTATGTGCCTTTCTT 136207 30 100.0 33 .............................. GTACCAACGACCTCTCTGCATCCGTCCGCGAAC 136270 30 100.0 37 .............................. GGGCGGGTATGGAGTATTTGTCGTGCAGGAAGGACTG 136337 30 100.0 37 .............................. GCTCGTCCGTCTCTCGCTGAGCTGAAGGATGACCACC 136404 30 100.0 34 .............................. TCTCGCTATATAGATATAGTTTATCGATTGTTTT 136468 30 100.0 36 .............................. TTCGATATTATAAAGGATAAACCGAAAGACCATGAG 136534 30 100.0 34 .............................. TTTGTCGATAGCATCCTCGACCAATTCTTTGAAT 136598 30 100.0 36 .............................. CCTGTCGTAATCGAGTCATTCACGAGGGATATCAGC 136664 30 100.0 36 .............................. GTGAAGCAGGACGATATACAAAGCTGGCTGGAGAGC 136730 30 100.0 36 .............................. AACTAATCCCTTTATTAGTCCGAAGGTTGGTGAAAC 136796 30 100.0 36 .............................. TCATCTCCTCGACTGCCTCCCCGTTTGCATCCTGAA 136862 30 100.0 36 .............................. ACAGGGAGGCTCAGGCCTTCTTCGCGCAGGCTGACG 136928 30 100.0 36 .............................. CAAACGCAGCATCGCAAACGCGGACTACACCTACAA 136994 30 100.0 35 .............................. AATACTCACCAATTTTTTATTATCATCCCAAAATT 137059 30 100.0 37 .............................. TAACTTATAACAAAGAGATCATCTCTGAATTGACAGA 137126 30 100.0 35 .............................. TATGATGATATAGAATCAGAAGAGCAGTTATTAGT 137191 30 100.0 35 .............................. GAGAATATAACAGTATTAAATTCTTAGTAGCTCAG 137256 30 100.0 38 .............................. TAAAAACAAAACAATAAAACAATAAAAAATTATGAACT 137324 30 100.0 35 .............................. ATAACAAAAAAACCTGCCCACGTGCTAACAGTGCG 137389 30 100.0 37 .............................. CGAGCGCCATCAGAACATGAAAATCTCCAATCCAAAT 137456 30 100.0 36 .............................. TCCGCTATGCGGAAAAAAAGAGACGAGGGTATACGT 137522 30 100.0 37 .............................. AAGATAGTTTCTAAACTCTTATCATTTATTATTTCAA 137589 30 100.0 36 .............................. AGGGATCGGCGAAGCGAGAAGACTTTTCGGGATGAG 137655 30 100.0 36 .............................. TCGAGAAACAAATAACAACCAACAAGAAATCCAAAA 137721 30 100.0 36 .............................. AGAAGACGCAGAAAACATTTATATCGACCTCCGCAC 137787 30 100.0 35 .............................. TTGTTGTCTTCAAGCCATTCTGCAACCTCATCATA 137852 30 100.0 35 .............................. AGGATTGTTCTGTCTGCCCAATCTCTGCCGTATTT 137917 30 100.0 36 .............................. TGACGAACGGAAATGCGGTAAAACGACGCGATTGCC 137983 30 100.0 35 .............................. AACGAAATGAAAAAGACAACAAACAGAAAACCCTC 138048 30 100.0 36 .............................. GAAATCGCCCTGCCTGTCGCAGAAGCTATCTGCAAC 138114 30 100.0 35 .............................. TATGCTTGAAGGCCCGTTTGATGGTCACCTCGTGC 138179 30 100.0 36 .............................. AACAGAATGGTATTTGTTAGGGCTGTAAAAAAGCGA 138245 30 100.0 36 .............................. GGAGGTTGACAGGTGGCAGCTCATTGATCTTCAGAC 138311 30 100.0 36 .............................. TTTCTTTTTGCTCAACACCAACTGTTTGTAATAACA 138377 30 100.0 36 .............................. TCCCAATTGGAATAGCTCCTAATGTCCCAAAAGCAA 138443 30 100.0 36 .............................. TGCACCAAAATATTTTCTTCATAACAGTAAGGAGCC 138509 30 100.0 36 .............................. CACAGCGCACCACTATCTCGACGTCCGCCGCTGCGA 138575 30 100.0 37 .............................. GGGCCTTGGAGACTGCAAAGAGGCTTCGGATATTATC 138642 30 100.0 36 .............................. TGATTACGCCAATGCCACGATAAAAAGAGAGGTGTT 138708 30 100.0 35 .............................. GAGACGTTGAGAACGGCATGCAACAGCTTTATATC 138773 30 100.0 35 .............................. GCGAATCTGAGAACTTCAACACCGCGAAATCGTAA 138838 30 100.0 35 .............................. AACTGCTTAAATAATTTATCCCTCTATATCTTTCA 138903 30 100.0 37 .............................. CGTCACCTACTATCCACGTGACCGCTGCATTTTCCTG 138970 30 100.0 36 .............................. AGAACGCGGAGGCCATCACAGCGTCCACTAATACTG 139036 30 100.0 37 .............................. AAGAAATACAAACAAAAGAAGGAAATGAAAGTATTGC 139103 30 100.0 37 .............................. TGACTGTGAAAGGTCACGACTTCCCGATGAAGGTAGT 139170 30 100.0 35 .............................. TACCAACTTGGCTCGCGCCTCGTCGTTAAACTTCG 139235 30 100.0 36 .............................. AGGGTATCGGATATTCCGTCATCCCGTTTGTTATTC 139301 30 100.0 35 .............................. AATATAGCCCTGACTGCCCTAACAGGGAGCATGAT 139366 30 100.0 35 .............................. GCCCCTCTTCGGGGAAACTTTGCTTGTCGAAAATA 139431 30 100.0 36 .............................. TTCATTTTACCGTTCATTTTACCGTTCATTCTCATC 139497 30 100.0 36 .............................. GCAATCCGACTATCCGTAAATTCGTCTCGATTTATG 139563 30 100.0 35 .............................. GCAATGAGTATAAAAAGCTGCTATCTGACAAAGAC 139628 30 100.0 36 .............................. ATGCTGGAGGTAGGGATGTCCTTGGGGCTGTGGTGC 139694 30 100.0 36 .............................. CTCCTGAGTCTGATTATATGACTGTACAGGTGAATT 139760 30 100.0 37 .............................. TTTAGCAACATGTTCTATATTTGCAATGTGTTTCGTT 139827 30 100.0 36 .............................. AGCGTGCTAAAACTCTTGAAGAAATTTCATATGATA 139893 30 100.0 37 .............................. GTTGCCAGAAAACAAGAAACTCTTTGAACTTCTCATC 139960 30 100.0 37 .............................. GTCGATTCATTGCAACGCCGCCGGTGCAGGTGGTGCG 140027 30 100.0 36 .............................. CGAGATCGATATAAATCGAAACTTTTTTATGCTTGC 140093 30 100.0 36 .............................. ACATTTCTCAGCTTCTCTATTTCTTTTTCGTTCTTT 140159 30 100.0 36 .............................. AATATATGATGATATAGAAGAAGACGAGATACTGTT 140225 30 100.0 35 .............................. CGTTTGATATTCTCAGATAACACAAATTATCGCTT 140290 30 100.0 37 .............................. TCAGTGGTTAGTAGCACAATTCTTGTGCTACTACAAC 140357 30 100.0 36 .............................. TATTTAGATTCTTCACAGAAGCTGACATTGAACCTT 140423 30 100.0 35 .............................. TGATTACACTTTCCGGTCTGGTTGTTACAATACCA 140488 30 100.0 35 .............................. CGTAGTATCAAGGCTTATGCATAAAAAAGGCCTAT 140553 30 100.0 35 .............................. TTATTATGCAGGGACAAGAGGAATTTTACTTGCCC 140618 30 100.0 36 .............................. TACATTGAGCTAGTAAACTTCTATGACCGCCCTGAG 140684 30 100.0 37 .............................. CTCCCGCCATTTCGCCCTTTCATTCTGAAATTATAAA 140751 30 100.0 36 .............................. TATCAGAAATGCAAGAAGAAAAATAATTAAAAATTT 140817 30 100.0 37 .............................. CTGACTATTTCGATACAATTACAAAAGAAGAGATAAT 140884 30 100.0 37 .............................. GATTCTTTACACAATCTGATATTGAATCATTAAAAGA 140951 30 100.0 36 .............................. AATATCTTCACTAACTAATCAAAGTATTCAAAATTT 141017 30 100.0 37 .............................. TAATATCTTCACTAACTAATCAAAGTATTCAAAATTT 141084 30 100.0 35 .............................. TTTAGTTAGTAGCTTTCTGATCTTCTAAATGATGA 141149 30 100.0 37 .............................. CCAATCCTGACAGCTTCTTCGAAGAGAACCTTAAGGA 141216 30 100.0 34 .............................. TTGCCAATTCCGAAAGACCGACGAATGTCCAGAT 141280 30 100.0 35 .............................. GACATAAAAGGGCGTGTATTCTTAGAACCTTCTGC 141345 30 100.0 35 .............................. ATATATGATGATATAGAAGAAAACGAGATACTTAC 141410 30 100.0 36 .............................. TATTAATCATCAACTGTTTATAGTAATACCCAAGTT 141476 30 100.0 36 .............................. CAGAGAAAAGAGAGTATAATAGCATTAAGTTTATAT 141542 30 100.0 36 .............................. AATTCAGATACTGAGATTCAAGTATTAGAAATAACG 141608 30 100.0 34 .............................. AAGCTGAAAAAACTATAATCTACTCCCTAAGGCC 141672 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 106 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CACCTGGGGTAGAGCGATATCGTATACGGTGTCGCCCTTCTCCACGGTGACCACGGTTCCGTGCCGCAGCATGGAATCCGGTATCCCTAAGCGCGGCTCCTGAGTGTACAATCGGCTCAAAGCCAACAACTTCAAACCCAACAAAAGCAAGGCTTTTCTATACATGTCTCAAACTTACAAAAAAACGACTGAGACTGCTTATACAATCGCAGCAAAAAAATACAATCGATTGATTTTCAAAATATTCTATACAAACCCACAACTCCGCATCCATCCCGATATTCTTTGTAGACCGTTTCCGGATATTTCCTCATTATCGCCAAAGAAATCCTTTTGACAATGGCCCTCTCTCCAATTATTTTGACTCCAAAAATTCCCTGTTCTATAGGCTCAAAAACGTGGCGCGGGAATTTTTTCGGTTTGGTTGGGGAAGTAAAAAATTCTCGTTAAGGAACAATTGAAATGGCATGCAACGGCAAGGTTCTCCGTGACGGAGCTAA # Right flank : TCCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCAAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //